Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2359.3 1193 100.0
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2253.4 1193 96.6
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1911.7 1207 81.7
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1907.1 1241 79.9
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1904.4 1241 79.9
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1895.2 1206 81.2
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1890.2 1199 81.1
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1887.5 1201 81.3
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1885.5 1229 80.1
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1878.6 1199 81.1
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1878.2 1229 80.0
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1877.8 1205 80.7
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1868.6 1204 80.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1863.6 1201 80.4
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1858.2 1205 79.2
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1855.1 1204 79.3
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1851.6 1204 79.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1848.9 1205 78.7
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1829.7 1206 78.9
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1827.8 1206 78.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1817.4 1206 78.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1814.3 1215 77.6
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1810.4 1264 76.1
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1808.9 1205 77.8
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1204 78.2
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1204 78.1
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1798.1 1215 77.9
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1796.2 1204 77.9
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1796.2 1206 77.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1795.4 1205 78.2
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1792.7 1204 77.0
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1786.2 1205 76.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1784.6 1203 77.3
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1249 75.7
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1779.2 1203 76.6
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1776.5 1205 76.3
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1775.4 1205 76.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1775.0 1253 75.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1775.0 1253 75.3
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1769.2 1253 75.2
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1759.2 1205 76.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1758.4 1202 75.9
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1758.0 1200 76.7
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1757.7 1206 76.4
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1755.7 1258 73.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1755.7 1209 75.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1748.4 1200 76.0
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1748.4 1208 75.4
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1746.1 1223 75.0
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1743.0 1200 75.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1739.5 1106 81.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1739.2 1202 76.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1225 74.4
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1735.3 1201 75.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1262 72.7
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1728.8 1201 75.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1206 74.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1205 74.4
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1709.1 1213 73.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1204 73.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1204 73.7
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1209 73.3
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1689.5 1204 73.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1205 72.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1202 72.5
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1668.3 1207 73.3
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1203 71.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1666.4 1202 72.8
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1665.2 1209 71.1
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1664.0 1207 73.1
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1663.7 1207 72.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1206 73.1
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1207 73.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1206 73.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1206 72.6
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1660.2 1205 71.6
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1659.8 1210 73.1
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1658.3 1205 72.0
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1657.1 1208 72.4
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1657.1 1265 69.9
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1656.3 1266 70.1
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1652.9 1204 71.8
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1651.7 1209 71.7
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1649.8 1133 76.1
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1649.8 1205 72.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1645.2 1206 72.1
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1210 72.4
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1644.4 1200 73.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1209 70.9
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1212 71.6
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1640.9 1193 72.2
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1243 70.1
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1636.7 1212 71.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1634.8 1205 71.7
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1634.4 1206 72.5
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1634.0 1212 71.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1628.6 1221 71.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1627.1 1204 72.3
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1626.3 1207 71.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1624.4 1236 71.0
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1619.4 1180 71.9
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1209 71.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1613.6 1210 70.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1613.2 1201 71.4
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1607.8 1212 70.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1208 71.1
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1586.6 1204 70.7
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1571.2 1206 70.4
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1570.1 1217 69.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1561.2 1224 68.8
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1558.9 1219 69.5
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1558.1 1181 69.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1555.8 1221 67.3
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1553.1 1205 67.9
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1546.9 1217 67.4
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1524.2 1212 66.3
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1523.1 1207 66.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1512.7 965 80.6
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1495.3 1143 70.4
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1488.0 948 80.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1474.9 948 79.5
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1435.2 1207 64.7
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1400.2 1211 63.8
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1364.7 1067 69.7
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1326.6 948 73.7
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1258.8 834 79.1
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1255.0 980 69.2
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1234.6 988 67.8
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1212.2 922 69.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1206.4 970 68.5
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1203.3 1204 57.5
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1196.8 806 77.9
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1140.9 846 71.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1099.7 844 69.8
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 5.6e-303 1044.6 1189 51.9
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.7e-296 1023.1 755 72.6
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.5e-287 993.4 1198 48.0
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 4.2e-282 975.3 1227 45.8
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.1e-269 932.6 541 85.8
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.9e-258 896.7 603 76.9
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.9e-253 878.2 744 65.3
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.5e-194 684.5 431 78.2
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 3.2e-181 640.2 361 88.9
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 8.2e-145 519.2 613 51.2
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 7.4e-138 496.1 895 40.6
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 6.9e-136 489.6 308 79.5
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 9.1e-136 489.2 304 81.9
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.6e-135 487.6 304 81.6
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.5e-117 428.7 835 35.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.0e-111 408.3 1321 29.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.3e-110 405.6 313 69.0
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 1.3e-94 352.4 224 77.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.4e-90 337.4 508 42.9
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 4.0e-83 314.3 283 64.7
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 5.1e-78 297.4 201 75.1
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.9e-77 295.4 182 81.9
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 7.3e-77 293.5 208 72.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 3.7e-73 281.2 260 61.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 3.5e-71 274.6 183 77.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 3.5e-63 248.1 181 66.9
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 6.0e-63 247.3 144 82.6
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.7e-62 245.7 182 70.9
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.7e-57 229.2 178 66.3
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.2e-50 206.5 132 80.3
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 8.4e-49 200.3 118 88.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.3e-44 186.4 125 73.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 3.3e-37 161.8 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.2e-31 143.3 90 81.1
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.2e-31 143.3 95 75.8
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.2e-31 143.3 95 75.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 4.3e-21 108.2 79 73.4
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.0e-17 97.1 59 79.7
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.9e-17 95.5 83 62.7
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.1e-15 89.4 80 58.8
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.0e-14 87.0 47 80.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.4e-14 86.7 142 41.5
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 5.1e-14 84.7 81 51.9
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 7.2e-08 64.3 64 53.1
arahy.Tifrunner.gnm1.ann1.MWX0EW Arachis hypogaea HOM05D021734 ORTHO05D011784 9.4e-08 63.9 29 96.6


User provided reference genes

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