Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 6.9e-127 457.2 216 100.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 2.0e-126 455.7 216 99.5
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 4.2e-116 421.4 217 91.2
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 9.4e-116 420.2 217 90.3
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.2e-115 419.9 216 92.1
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.6e-115 419.5 217 90.3
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 6.1e-115 417.5 217 90.3
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 6.1e-115 417.5 216 91.2
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 3.0e-114 415.2 217 89.4
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 3.9e-114 414.8 215 91.6
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 3.9e-114 414.8 215 91.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 6.7e-114 414.1 216 90.7
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 6.7e-114 414.1 216 90.7
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.1e-113 413.3 216 91.7
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.5e-113 412.9 217 90.3
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.3e-113 411.8 216 90.3
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 5.7e-113 411.0 216 90.7
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-112 409.8 216 89.4
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.7e-112 409.5 216 90.3
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.7e-112 409.5 216 89.4
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.8e-112 408.7 216 88.9
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 2.8e-112 408.7 216 89.8
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.7e-112 408.3 220 89.1
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 6.3e-112 407.5 216 89.8
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 8.2e-112 407.1 205 92.2
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.1e-111 406.8 216 88.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.1e-111 406.8 216 89.4
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.4e-111 406.4 216 88.9
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 1.4e-111 406.4 216 88.0
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.8e-111 406.0 216 89.4
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.8e-111 406.0 217 89.9
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.4e-111 405.6 216 89.4
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 4.1e-111 404.8 217 87.6
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.3e-111 404.4 217 88.9
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 5.3e-111 404.4 216 87.0
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 6.9e-111 404.1 220 88.6
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 6.9e-111 404.1 216 87.5
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 4.5e-110 401.4 216 87.5
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 5.9e-110 401.0 214 87.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 7.7e-110 400.6 216 87.5
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.0e-109 400.2 238 81.9
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 2.2e-109 399.1 216 88.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 3.8e-109 398.3 217 86.2
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 8.5e-109 397.1 217 88.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.4e-108 396.4 216 86.1
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.9e-108 396.0 216 86.6
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.9e-108 396.0 216 86.6
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 1.9e-108 396.0 232 83.2
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 87.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 7.2e-108 394.0 216 86.1
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.2e-107 393.3 218 84.9
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.6e-107 392.9 216 85.6
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 3.6e-107 391.7 216 84.7
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 4.7e-107 391.3 216 84.7
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 6.1e-107 391.0 216 85.6
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 3.3e-105 385.2 216 84.3
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 3.3e-105 385.2 216 84.3
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 5.7e-105 384.4 217 84.8
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 5.7e-105 384.4 225 82.7
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.3e-104 383.3 200 88.5
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 2.2e-104 382.5 216 85.2
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 2.8e-104 382.1 217 83.9
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.8e-104 381.3 216 83.8
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 4.8e-104 381.3 200 87.0
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.1e-103 380.2 217 82.9
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.1e-103 380.2 216 83.3
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 217 82.9
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.8e-103 379.4 217 82.9
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 3.1e-103 378.6 217 82.9
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 7.0e-103 377.5 216 81.0
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 9.1e-103 377.1 217 82.9
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.2e-102 376.7 217 82.5
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.2e-102 376.7 221 82.8
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.6e-102 375.6 217 81.6
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 3.5e-102 375.2 189 92.1
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 4.5e-102 374.8 217 82.5
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.5
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 5.9e-102 374.4 197 90.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 6.5e-101 370.9 217 81.1
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.5e-101 370.9 200 87.0
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.1e-100 370.2 242 76.4
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.1e-100 370.2 186 91.4
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.2e-100 368.6 219 77.6
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.6e-99 365.2 184 91.3
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 4.7e-99 364.8 218 80.7
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 6.1e-99 364.4 210 81.0
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 6.1e-99 364.4 189 90.5
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.0e-98 363.6 182 91.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.3e-98 362.5 191 90.6
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.0e-98 362.1 190 88.9
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.0e-98 362.1 219 75.8
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 9.7e-97 357.1 204 82.4
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.7e-96 355.1 204 82.4
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.1e-95 353.6 202 82.2
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.1e-95 353.6 198 83.8
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.1e-95 352.1 204 81.9
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.1e-95 352.1 188 85.1
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 5.3e-95 351.3 190 87.9
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 7.2e-92 340.9 208 76.4
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 4.0e-90 335.1 192 80.7
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.7e-85 319.7 189 73.5
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 2.5e-84 315.8 189 71.4
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.6e-83 312.0 215 65.6
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.6e-81 305.8 196 68.4
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 9.5e-76 287.3 145 91.0
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.8e-75 285.8 172 79.7
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.8e-75 285.8 172 79.7
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 3.6e-75 285.4 145 88.3
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 6.1e-75 284.6 199 64.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.4e-71 273.5 133 93.2
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 6.2e-67 258.1 133 89.5
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.4e-66 256.9 133 88.0
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.3e-61 239.6 130 82.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 6.6e-61 238.0 122 87.7
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.0e-58 228.8 126 85.7
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 5.8e-57 224.9 158 70.9
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.9e-49 197.6 107 87.9
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 7.6e-41 171.4 89 89.9
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.2e-39 166.0 93 82.8
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 9.0e-34 147.9 87 82.8
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.5e-33 147.1 83 89.2
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 4.5e-25 119.0 208 34.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.1e-23 114.4 224 34.4
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 7.1e-15 85.1 39 97.4
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 1.6e-14 84.0 42 85.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 5.1e-13 79.0 64 62.5
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.9e-08 63.2 39 64.1


User provided reference genes

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