Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 5.0e-38 160.6 81 100.0
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 6.1e-36 153.7 78 97.4
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 8.0e-36 153.3 78 96.2
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 8.0e-36 153.3 78 96.2
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 8.0e-36 153.3 78 96.2
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.4e-35 152.5 78 97.4
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 1.8e-35 152.1 78 96.2
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 96.2
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.3e-35 151.8 78 94.9
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 3.0e-35 151.4 77 94.8
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 93.6
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 93.6
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 93.6
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 93.6
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 94.9
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 96.2
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 93.6
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 5.2e-35 150.6 78 93.6
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 6.8e-35 150.2 78 94.9
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 6.8e-35 150.2 78 94.9
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 6.8e-35 150.2 78 93.6
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 8.8e-35 149.8 78 92.3
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 8.8e-35 149.8 76 94.7
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 8.8e-35 149.8 76 94.7
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 8.8e-35 149.8 78 92.3
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 8.8e-35 149.8 78 93.6
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 8.8e-35 149.8 78 93.6
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 8.8e-35 149.8 78 93.6
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 8.8e-35 149.8 78 93.6
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 8.8e-35 149.8 76 94.7
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 1.2e-34 149.4 78 92.3
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 1.2e-34 149.4 78 92.3
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 1.2e-34 149.4 78 92.3
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 1.2e-34 149.4 78 92.3
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.2e-34 149.4 78 93.6
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.5e-34 149.1 78 92.3
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.5e-34 149.1 78 92.3
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.5e-34 149.1 78 94.9
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.5e-34 149.1 78 94.9
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 1.5e-34 149.1 78 94.9
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 2.0e-34 148.7 78 93.6
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.0e-34 148.7 78 91.0
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 2.6e-34 148.3 78 92.3
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 2.6e-34 148.3 78 93.6
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.6e-34 148.3 78 92.3
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 2.6e-34 148.3 81 88.9
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 2.6e-34 148.3 78 93.6
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 3.4e-34 147.9 78 93.6
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 3.4e-34 147.9 78 92.3
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 4.4e-34 147.5 78 93.6
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 4.4e-34 147.5 78 92.3
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 5.7e-34 147.1 78 93.6
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 5.7e-34 147.1 78 92.3
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 7.5e-34 146.7 78 92.3
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 7.5e-34 146.7 78 92.3
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 7.5e-34 146.7 78 92.3
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 7.5e-34 146.7 78 92.3
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 7.5e-34 146.7 78 89.7
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 9.8e-34 146.4 78 91.0
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 9.8e-34 146.4 78 91.0
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 9.8e-34 146.4 78 92.3
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.3e-33 146.0 78 92.3
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.7e-33 145.6 78 91.0
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 1.7e-33 145.6 78 91.0
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.7e-33 145.6 78 91.0
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.7e-33 145.6 77 92.2
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.7e-33 144.4 78 89.7
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.7e-33 144.4 78 89.7
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 3.7e-33 144.4 76 89.5
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 4.9e-33 144.1 78 91.0
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 4.9e-33 144.1 78 92.3
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 6.3e-33 143.7 76 90.8
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 6.3e-33 143.7 78 91.0
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 6.3e-33 143.7 78 91.0
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 8.3e-33 143.3 76 88.2
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 8.3e-33 143.3 78 89.7
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 1.1e-32 142.9 76 89.5
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.1e-32 142.9 76 89.5
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 1.1e-32 142.9 76 89.5
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 2.4e-32 141.7 76 89.5
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.4e-32 141.7 78 88.5
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 3.1e-32 141.4 78 89.7
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 4.1e-32 141.0 77 89.6
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 5.4e-32 140.6 76 88.2
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 9.2e-32 139.8 78 87.2
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 1.2e-31 139.4 76 86.8
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 1.6e-31 139.0 78 87.2
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 1.6e-31 139.0 78 87.2
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 2.0e-31 138.7 78 85.9
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 3.5e-31 137.9 78 85.9
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 4.5e-31 137.5 79 87.3
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 4.5e-31 137.5 77 88.3
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 4.5e-31 137.5 78 88.5
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 5.9e-31 137.1 78 87.2
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.0e-30 136.3 78 85.9
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 3.8e-30 134.4 75 82.7
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 3.8e-30 134.4 77 87.0
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 3.8e-30 134.4 78 87.2
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 1.5e-29 132.5 75 84.0
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 2.5e-29 131.7 75 84.0
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 4.3e-29 131.0 78 82.1
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 5.6e-29 130.6 75 85.3
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 9.5e-29 129.8 74 82.4
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 5.4e-24 114.0 76 72.4
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 7.0e-24 113.6 73 76.7
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.6e-23 112.5 73 75.3
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 3.9e-22 107.8 73 71.2
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 1.5e-21 105.9 75 66.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 1.2e-20 102.8 78 65.4
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 7.5e-18 93.6 46 89.1
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.7e-17 92.4 50 86.0
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 1.4e-16 89.4 76 56.6
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.4e-16 88.6 73 60.3
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 1.4e-08 62.8 36 88.9
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 6.0e-07 57.4 68 47.1


User provided reference genes

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