Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 5.8e-156 554.3 300 100.0
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 1.7e-144 516.2 311 92.0
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.5e-63 247.3 299 53.2
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 4.1e-61 239.2 307 51.5
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.4e-61 238.8 298 51.7
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 3.5e-60 236.1 314 48.4
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 8.6e-59 231.5 294 49.3
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 4.9e-54 215.7 291 48.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 6.4e-54 215.3 317 46.7
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.3e-51 207.6 306 44.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.4e-48 197.6 301 44.9
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 4.9e-38 162.5 209 48.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 2.2e-30 137.1 291 36.8
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.4e-30 135.6 294 38.4
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.8e-28 128.6 310 35.2
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.7e-27 127.5 298 35.9
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 3.9e-27 126.3 299 34.4
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.6e-27 125.6 289 34.9
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.9e-26 124.0 322 35.4
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.3e-26 123.2 319 33.5
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.3e-26 122.9 329 32.5
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.2e-25 121.3 323 34.1
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.2e-25 121.3 297 34.3
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.1e-25 120.6 302 33.8
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 8.1e-25 118.6 288 35.8
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 8.1e-25 118.6 303 34.0
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-24 118.2 288 35.8
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.1e-24 118.2 285 34.4
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.1e-24 118.2 290 35.2
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.8e-24 117.5 288 35.8
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 3.1e-24 116.7 288 35.8
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 5.2e-24 115.9 308 33.1
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 6.9e-24 115.5 290 34.8
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.5e-23 114.4 281 33.8
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.0e-23 114.0 284 35.2
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.6e-23 113.6 300 34.0
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 5.8e-23 112.5 317 35.3
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 2.9e-22 110.2 286 32.5
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.9e-22 110.2 215 37.7
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.9e-21 107.5 214 37.9
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.2e-21 106.7 296 32.4
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 4.2e-21 106.3 132 47.7
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 5.4e-21 105.9 124 47.6
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 7.1e-21 105.5 149 46.3
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 9.3e-21 105.1 143 49.7
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.2e-20 104.8 293 31.1
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.7e-20 103.6 277 32.9
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.7e-20 103.6 192 39.6
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.7e-20 103.6 284 33.8
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 6.0e-20 102.4 300 32.3
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 3.0e-19 100.1 137 48.9
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 8.7e-19 98.6 297 32.7
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.5e-18 97.1 300 32.0
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.3e-18 96.3 194 36.1
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 7.3e-18 95.5 320 30.0
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 9.6e-18 95.1 290 29.7
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.1e-17 94.0 320 29.7
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.8e-17 93.6 191 36.1
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.6e-17 93.2 290 29.3
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 6.2e-17 92.4 301 30.6
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 6.2e-17 92.4 291 30.9
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.2e-17 92.4 321 29.6
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 8.1e-17 92.0 132 42.4
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.4e-16 91.3 292 28.8
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.4e-16 91.3 126 46.0
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 3.1e-16 90.1 293 31.1
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 6.9e-16 89.0 295 31.9
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.9e-16 89.0 295 32.5
TPR.G24153 Trifolium pratense HOM05D003500 ORTHO05D003919 2.6e-15 87.0 138 40.6
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.5e-15 86.3 294 31.6
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.5e-15 86.3 292 29.5
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 7.6e-15 85.5 315 27.3
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.9e-15 85.1 296 28.7
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.3e-14 84.7 291 27.8
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 2.2e-14 84.0 169 34.3
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.9e-14 83.6 280 30.4
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 4.9e-14 82.8 289 30.8
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 6.4e-14 82.4 304 27.6
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 8.4e-14 82.0 289 27.3
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.4e-13 81.3 290 31.0
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.2e-13 80.1 291 28.2
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.2e-13 79.7 302 27.5
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 5.4e-13 79.3 140 40.7
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.1e-13 79.0 85 52.9
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 7.1e-13 79.0 289 28.7
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.3e-13 78.6 293 31.4
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.6e-12 77.8 295 27.1
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.6e-12 77.8 294 28.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.6e-12 77.8 268 30.6
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.1e-12 77.4 310 28.4
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 2.1e-12 77.4 305 27.5
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.5e-12 76.6 305 27.5
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 7.9e-12 75.5 294 29.9
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.0e-11 75.1 324 26.2
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.0e-11 75.1 292 28.8
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.8e-11 74.3 287 27.9
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.3e-11 73.9 302 26.8
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 3.9e-11 73.2 291 28.2
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 6.7e-11 72.4 294 26.5
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 8.7e-11 72.0 294 26.5
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 8.7e-11 72.0 291 28.2
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.1e-10 71.6 294 26.2
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.5e-10 71.2 294 25.9
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.9e-10 70.9 323 26.3
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.9e-10 70.9 275 27.6
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.9e-10 70.9 293 26.3
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.9e-10 70.9 311 29.6
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.9e-10 70.9 283 23.7
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.5e-10 70.5 303 25.4
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.3e-10 70.1 292 26.4
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.3e-10 70.1 297 27.3
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 4.3e-10 69.7 295 26.1
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 4.3e-10 69.7 281 24.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 7.4e-10 68.9 283 26.1
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 7.4e-10 68.9 300 26.3
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 7.4e-10 68.9 290 27.6
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 9.6e-10 68.6 283 23.7
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 9.6e-10 68.6 140 27.9
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.3e-09 68.2 311 27.7
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 2.8e-09 67.0 121 37.2
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.6e-09 66.6 293 27.0
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.2e-09 65.9 283 23.0
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.1e-08 65.1 132 30.3
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-08 64.7 293 25.6
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 1.4e-08 64.7 297 26.9
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.4e-08 64.7 287 26.8
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.8e-08 64.3 307 25.1
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.8e-08 64.3 307 25.1
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 3.1e-08 63.5 111 40.5
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 3.1e-08 63.5 111 40.5
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 3.1e-08 63.5 117 41.9
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 5.3e-08 62.8 290 26.6
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 5.3e-08 62.8 305 25.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 9.0e-08 62.0 293 27.6
Lalb_Chr01g0012681 Lupinus albus HOM05D003500 ORTHO05D003919 9.0e-08 62.0 80 46.2
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.5e-07 61.2 293 28.0
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 3.4e-07 60.1 304 24.3
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.6e-07 58.9 281 24.9
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 7.6e-07 58.9 284 27.5
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 9.9e-07 58.5 324 21.3
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.3e-06 58.2 291 25.8
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.3e-06 58.2 286 26.2
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-06 58.2 224 29.5
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.7e-06 57.8 281 27.8
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 2.9e-06 57.0 288 25.3
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.8e-06 56.6 285 25.6
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 3.8e-06 56.6 288 25.0
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 4.9e-06 56.2 132 34.8
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 6.4e-06 55.8 283 25.8


User provided reference genes

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