Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A8ZC2Q Arachis hypogaea HOM05D000028 ORTHO05D019771 6.5e-35 150.2 78 100.0
arahy.Tifrunner.gnm1.ann1.ZGW6CE Arachis hypogaea HOM05D000028 ORTHO05D004476 1.0e-11 73.2 39 100.0
arahy.Tifrunner.gnm1.ann1.HMZM2U Arachis hypogaea HOM05D000028 ORTHO05D019771 8.6e-11 70.1 48 83.3
arahy.Tifrunner.gnm1.ann1.63ATS7 Arachis hypogaea HOM05D000028 ORTHO05D004476 4.3e-10 67.8 39 94.9
Nn1g02719 Nelumbo nucifera HOM05D000028 ORTHO05D004476 2.3e-08 62.0 40 80.0
Aqoxy5G00255 Aquilegia oxysepala HOM05D000028 ORTHO05D004476 3.1e-08 61.6 40 80.0
CiPaw.01G186800 Carya illinoinensis HOM05D000028 ORTHO05D004476 4.0e-08 61.2 36 88.9
Thecc.04G253000 Theobroma cacao HOM05D000028 ORTHO05D004476 4.0e-08 61.2 40 80.0
GSVIVG01027765001 Vitis vinifera HOM05D000028 ORTHO05D004476 4.0e-08 61.2 36 86.1
arahy.Tifrunner.gnm1.ann1.WPS666 Arachis hypogaea HOM05D000028 ORTHO05D019771 5.2e-08 60.8 43 88.4
Dinv29878 Davidia involucrata HOM05D000118 ORTHO05D000098 5.2e-08 60.8 52 63.5
Hma1.2p1_0267F.1_g107390 Hydrangea macrophylla HOM05D000028 ORTHO05D004476 5.2e-08 60.8 40 77.5
TWI09G0960 Tripterygium wilfordii HOM05D000028 ORTHO05D004476 6.8e-08 60.5 36 88.9
arahy.Tifrunner.gnm1.ann1.8U0PAQ Arachis hypogaea HOM05D000028 ORTHO05D004476 8.9e-08 60.1 39 79.5
Ciclev10005315m.g Citrus clementina HOM05D000028 ORTHO05D004476 8.9e-08 60.1 40 72.5
Dinv27036 Davidia involucrata HOM05D000028 ORTHO05D004476 8.9e-08 60.1 36 86.1
Duzib052G1141 Durio zibethinus HOM05D000028 ORTHO05D004476 8.9e-08 60.1 40 75.0
Manes.03G165700 Manihot esculenta HOM05D000028 ORTHO05D004476 8.9e-08 60.1 36 88.9
Rhsim07G0130200 Rhododendron simsii HOM05D000028 ORTHO05D004476 8.9e-08 60.1 36 86.1
vmacro08468 Vaccinium macrocarpon HOM05D000028 ORTHO05D004476 8.9e-08 60.1 36 86.1
Cfa008328 Carpinus fangiana HOM05D000028 ORTHO05D004476 1.2e-07 59.7 36 83.3
Haze_11343 Corylus avellana HOM05D000028 ORTHO05D004476 1.2e-07 59.7 36 83.3
DCAR_002326 Daucus carota HOM05D000028 ORTHO05D004476 1.2e-07 59.7 40 75.0
MD13G1212300 Malus domestica HOM05D000028 ORTHO05D004476 1.2e-07 59.7 36 83.3
Prupe.1G037200 Prunus persica HOM05D000028 ORTHO05D004476 1.5e-07 59.3 36 80.6
QL06p016974 Quercus lobata HOM05D000028 ORTHO05D004476 1.5e-07 59.3 36 83.3
ATR0680G027 Amborella trichopoda HOM05D000028 ORTHO05D004476 2.0e-07 58.9 40 72.5
CSS0011200 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D004476 2.0e-07 58.9 36 83.3
DCAR_002325 Daucus carota HOM05D000028 ORTHO05D004476 2.0e-07 58.9 40 72.5
Potri.008G165600 Populus trichocarpa HOM05D000028 ORTHO05D004476 2.0e-07 58.9 36 83.3
arahy.Tifrunner.gnm1.ann1.AT9VNX Arachis hypogaea HOM05D000028 ORTHO05D004476 2.6e-07 58.5 39 76.9
Cpa.g.sc44.79 Carica papaya HOM05D000028 ORTHO05D004476 2.6e-07 58.5 36 83.3
Nn1g02720 Nelumbo nucifera HOM05D000028 ORTHO05D004476 2.6e-07 58.5 40 72.5
PGR004G2414 Punica granatum HOM05D000028 ORTHO05D004476 2.6e-07 58.5 36 83.3
Sabra08G0126100 Salix brachista HOM05D000028 ORTHO05D004476 2.6e-07 58.5 36 83.3
CANSAT78G2132 Cannabis sativa HOM05D000028 ORTHO05D004476 3.4e-07 58.2 36 86.1
Eucgr.H03093 Eucalyptus grandis HOM05D000028 ORTHO05D004476 3.4e-07 58.2 36 80.6
FAN12G1149 Fragaria x ananassa HOM05D000028 ORTHO05D019771 3.4e-07 58.2 42 66.7
Glyma.10G187700 Glycine max HOM05D000028 ORTHO05D004476 3.4e-07 58.2 39 74.4
MBI17_g07953_MAGBIO Magnolia biondii HOM05D000028 ORTHO05D004476 3.4e-07 58.2 40 67.5
VMungo0720G2168 Vigna mungo HOM05D000028 ORTHO05D004476 3.4e-07 58.2 39 74.4
COL.COLO4_05167 Corchorus olitorius HOM05D000028 ORTHO05D004476 4.4e-07 57.8 40 65.0
PSO210G5855 Papaver somniferum HOM05D000028 ORTHO05D004476 4.4e-07 57.8 40 75.0
PSO832G0225 Papaver somniferum HOM05D000028 ORTHO05D004476 4.4e-07 57.8 40 75.0
TAR365G0518 Trochodendron aralioides HOM05D000028 ORTHO05D004476 4.4e-07 57.8 36 77.8
Actinidia40063 Actinidia chinensis HOM05D000028 ORTHO05D004476 5.8e-07 57.4 36 80.6
Duzib212G0209 Durio zibethinus HOM05D000028 ORTHO05D004476 5.8e-07 57.4 40 75.0
FvH4_4g03390 Fragaria vesca HOM05D000028 ORTHO05D004476 5.8e-07 57.4 36 80.6
FvH4_4g03400 Fragaria vesca HOM05D000028 ORTHO05D004476 5.8e-07 57.4 40 70.0
FAN12G1759 Fragaria x ananassa HOM05D000028 ORTHO05D004476 5.8e-07 57.4 36 80.6
FAN17G0363 Fragaria x ananassa HOM05D000028 ORTHO05D004476 5.8e-07 57.4 36 80.6
FAN22G1476 Fragaria x ananassa HOM05D000028 ORTHO05D004476 5.8e-07 57.4 36 80.6
Gohir.A02G038200 Gossypium hirsutum HOM05D000028 ORTHO05D004476 5.8e-07 57.4 40 72.5
Gohir.D02G044300 Gossypium hirsutum HOM05D000028 ORTHO05D004476 5.8e-07 57.4 40 72.5
Gorai.005G049000 Gossypium raimondii HOM05D000028 ORTHO05D004476 5.8e-07 57.4 40 72.5
RcHm_v2.0_Chr4g0392371 Rosa chinensis HOM05D000028 ORTHO05D004476 5.8e-07 57.4 36 80.6
Atru.chr4.2093 Acer truncatum HOM05D000028 ORTHO05D004476 7.5e-07 57.0 36 77.8
ClCG06G006900 Citrullus lanatus HOM05D000028 ORTHO05D004476 7.5e-07 57.0 40 67.5
Hma1.2p1_0267F.1_g107400 Hydrangea macrophylla HOM05D000028 ORTHO05D004476 7.5e-07 57.0 35 80.0
RcHm_v2.0_Chr4g0392391 Rosa chinensis HOM05D000028 ORTHO05D004476 7.5e-07 57.0 45 64.4
EL10Ac3g05031 Beta vulgaris HOM05D000028 ORTHO05D004476 9.8e-07 56.6 45 60.0
Hma1.2p1_0267F.1_g107430 Hydrangea macrophylla HOM05D000028 ORTHO05D004476 9.8e-07 56.6 35 77.1
Lj6C662T6 Lonicera japonica HOM05D000028 ORTHO05D004476 9.8e-07 56.6 36 77.8
Manes.15G039201 Manihot esculenta HOM05D000028 ORTHO05D004476 9.8e-07 56.6 36 83.3
AUR62002109 Chenopodium quinoa HOM05D000028 ORTHO05D004476 1.3e-06 56.2 36 75.0
Medtr1g074160 Medicago truncatula HOM05D000028 ORTHO05D004476 1.3e-06 56.2 39 74.4
Phvul.007G128600 Phaseolus vulgaris HOM05D000028 ORTHO05D004476 1.3e-06 56.2 39 69.2
GSVIVG01028302001 Vitis vinifera HOM05D000028 ORTHO05D004476 1.3e-06 56.2 40 70.0
Zm00001eb003960 Zea mays HOM05D000028 ORTHO05D004476 1.3e-06 56.2 40 62.5
Lalb_Chr06g0169391 Lupinus albus HOM05D000028 ORTHO05D004476 1.7e-06 55.8 41 65.9
Cc03_g05360 Coffea canephora HOM05D000028 ORTHO05D004476 2.2e-06 55.5 40 62.5
COL.COLO4_05168 Corchorus olitorius HOM05D000028 ORTHO05D004476 2.2e-06 55.5 39 64.1
Glyma.20G203100 Glycine max HOM05D000028 ORTHO05D004476 2.2e-06 55.5 38 76.3
Gohir.A11G129701 Gossypium hirsutum HOM05D000028 ORTHO05D019771 2.2e-06 55.5 36 69.4
Medtr1g074120 Medicago truncatula HOM05D000028 ORTHO05D004476 2.2e-06 55.5 39 74.4
Os03g0149300 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D004476 2.2e-06 55.5 40 62.5
HPP92_020763 Vanilla planifolia HOM05D000028 ORTHO05D004476 2.2e-06 55.5 39 61.5
Medtr1g051120 Medicago truncatula HOM05D000028 ORTHO05D004476 2.9e-06 55.1 43 65.1
TPR.G10621 Trifolium pratense HOM05D000028 ORTHO05D004476 2.9e-06 55.1 39 69.2
Atru.chr5.1646 Acer truncatum HOM05D000028 ORTHO05D004476 3.7e-06 54.7 36 75.0
Cfa002406 Carpinus fangiana HOM05D000028 ORTHO05D004476 3.7e-06 54.7 36 72.2
AUR62028227 Chenopodium quinoa HOM05D000028 ORTHO05D004476 3.7e-06 54.7 36 72.2
Prupe.8G225600 Prunus persica HOM05D000028 ORTHO05D004476 3.7e-06 54.7 40 67.5
TAR633G0176 Trochodendron aralioides HOM05D000118 ORTHO05D004476 3.7e-06 54.7 36 77.8
Zm00001eb020240 Zea mays HOM05D000028 ORTHO05D004476 3.7e-06 54.7 36 69.4
Medtr1g073990 Medicago truncatula HOM05D000028 ORTHO05D004476 4.9e-06 54.3 40 67.5
MD10G1186000 Malus domestica HOM05D000028 ORTHO05D004476 6.4e-06 53.9 40 62.5
Nn3g19622 Nelumbo nucifera HOM05D000028 ORTHO05D004476 6.4e-06 53.9 40 67.5
Sabra05G0171300 Salix brachista HOM05D000028 ORTHO05D004476 6.4e-06 53.9 36 75.0
CAN.G638.62 Capsicum annuum HOM05D000028 ORTHO05D004476 8.3e-06 53.5 40 62.5
Dinv22418 Davidia involucrata HOM05D000028 ORTHO05D004476 8.3e-06 53.5 40 67.5
Gorai.007G144900 Gossypium raimondii HOM05D000028 ORTHO05D004476 8.3e-06 53.5 45 57.8
Peaxi162Scf01041g00110 Petunia axillaris HOM05D000028 ORTHO05D004476 8.3e-06 53.5 40 62.5


User provided reference genes

Program Settings