Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A8R8TX Arachis hypogaea HOM05D002986 ORTHO05D003966 1.6e-103 380.6 432 100.0
arahy.Tifrunner.gnm1.ann1.Z51W7G Arachis hypogaea HOM05D002986 ORTHO05D013699 1.4e-57 228.0 476 39.7
arahy.Tifrunner.gnm1.ann1.T6B6L0 Arachis hypogaea HOM05D002986 ORTHO05D003966 8.0e-50 202.2 295 97.6
arahy.Tifrunner.gnm1.ann1.N9VQ32 Arachis hypogaea HOM05D002986 ORTHO05D003966 2.0e-48 197.6 294 96.9
GSVIVG01031218001 Vitis vinifera HOM05D002986 ORTHO05D007611 6.2e-26 122.9 292 84.9
Medtr7g060720 Medicago truncatula HOM05D002986 ORTHO05D003966 1.1e-25 122.1 83 69.9
Dinv32619 Davidia involucrata HOM05D002986 ORTHO05D007611 1.5e-24 118.2 85 63.5
Ciclev10024306m.g Citrus clementina HOM05D002986 ORTHO05D003966 7.6e-24 115.9 293 82.6
Atru.chr5.721 Acer truncatum HOM05D002986 ORTHO05D003966 3.7e-23 113.6 85 62.4
Lj7C453T5 Lonicera japonica HOM05D002986 ORTHO05D003966 3.7e-23 113.6 85 58.8
TWI59G0009 Tripterygium wilfordii HOM05D002986 ORTHO05D003966 3.7e-23 113.6 84 63.1
Cpa.g.c29128.3 Carica papaya HOM05D002986 ORTHO05D003966 8.4e-23 112.5 84 60.7
Eucgr.E00027 Eucalyptus grandis HOM05D002986 ORTHO05D003966 1.9e-22 111.3 291 75.9
Manes.05G019600 Manihot esculenta HOM05D002986 ORTHO05D003966 2.4e-22 110.9 292 82.5
TAR636G3678 Trochodendron aralioides HOM05D002986 ORTHO05D007611 2.4e-22 110.9 84 58.3
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 3.2e-22 110.5 294 80.6
CiPaw.01G079100 Carya illinoinensis HOM05D002986 ORTHO05D003966 4.1e-22 110.2 82 63.4
Duzib138G0512 Durio zibethinus HOM05D002986 ORTHO05D003966 4.1e-22 110.2 85 62.4
Nitab4.5_0000307g0100 Nicotiana tabacum HOM05D002986 ORTHO05D000761 5.4e-22 109.8 85 61.2
Thecc.01G337500 Theobroma cacao HOM05D002986 ORTHO05D003966 5.4e-22 109.8 84 61.9
TAR374G0774 Trochodendron aralioides HOM05D003160 ORTHO05D010088 9.2e-22 109.0 84 58.3
Rhsim07G0001900 Rhododendron simsii HOM05D002986 ORTHO05D007611 1.2e-21 108.6 83 59.0
Nitab4.5_0002527g0080 Nicotiana tabacum HOM05D000716 ORTHO05D004822 1.6e-21 108.2 85 60.0
CSS0037924 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 3.5e-21 107.1 84 57.1
Haze_15702 Corylus avellana HOM05D002986 ORTHO05D003966 3.5e-21 107.1 82 61.0
Cfa003765 Carpinus fangiana HOM05D002986 ORTHO05D003966 6.0e-21 106.3 82 59.8
Actinidia25367 Actinidia chinensis HOM05D002986 ORTHO05D003966 1.0e-20 105.5 82 57.3
MD02G1232100 Malus domestica HOM05D002986 ORTHO05D003966 1.0e-20 105.5 294 80.3
Gohir.D07G140800 Gossypium hirsutum HOM05D002986 ORTHO05D003966 1.3e-20 105.1 85 57.6
Gorai.001G152700 Gossypium raimondii HOM05D002986 ORTHO05D003966 1.3e-20 105.1 85 57.6
Sopen01g039970 Solanum pennellii HOM05D002986 ORTHO05D009442 1.3e-20 105.1 85 56.5
CANSAT35G1083 Cannabis sativa HOM05D002986 ORTHO05D003966 1.7e-20 104.8 85 57.6
SalBow4G2308 Salvia bowleyana HOM05D002986 ORTHO05D003966 1.7e-20 104.8 294 78.6
DCAR_006392 Daucus carota HOM05D002986 ORTHO05D003966 2.3e-20 104.4 291 80.4
Lsat_1_v5_gn_7_4680 Lactuca sativa HOM05D002986 ORTHO05D003966 2.3e-20 104.4 294 79.6
Lalb_Chr19g0125351 Lupinus albus HOM05D002986 ORTHO05D003966 2.3e-20 104.4 295 82.4
CDE07G1865 Ceratophyllum demersum HOM05D002986 ORTHO05D003966 3.0e-20 104.0 84 53.6
Solyc01g096210.4 Solanum lycopersicum HOM05D002986 ORTHO05D003966 3.0e-20 104.0 85 56.5
Aqoxy3G02934 Aquilegia oxysepala HOM05D002986 ORTHO05D003966 3.9e-20 103.6 85 52.9
CSS0011148 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 3.9e-20 103.6 85 55.3
HanXRQChr04g0120401 Helianthus annuus HOM05D002986 ORTHO05D003966 3.9e-20 103.6 291 80.1
Oeu004987.4 Olea europaea HOM05D002986 ORTHO05D003966 3.9e-20 103.6 84 56.0
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 5.1e-20 103.2 85 57.6
RcHm_v2.0_Chr1g0340691 Rosa chinensis HOM05D002986 ORTHO05D003966 5.1e-20 103.2 85 60.0
Glyma.07G131700 Glycine max HOM05D002986 ORTHO05D003966 6.6e-20 102.8 290 83.1
Gohir.A07G135800 Gossypium hirsutum HOM05D002986 ORTHO05D003966 6.6e-20 102.8 85 56.5
Prupe.2G106500 Prunus persica HOM05D002986 ORTHO05D003966 8.6e-20 102.4 294 80.3
SalBow5G2864 Salvia bowleyana HOM05D001628 ORTHO05D001568 8.6e-20 102.4 294 78.6
Nn1g06487 Nelumbo nucifera HOM05D002986 ORTHO05D003966 1.5e-19 101.7 84 54.8
PGSC0003DMG400000242 Solanum tuberosum HOM05D002986 ORTHO05D009442 1.9e-19 101.3 85 55.3
QL08p046166 Quercus lobata HOM05D002986 ORTHO05D003966 2.5e-19 100.9 83 56.6
THA.LOC104798785 Tarenaya hassleriana HOM05D002986 ORTHO05D003966 2.5e-19 100.9 83 54.2
MELO3C014863.2 Cucumis melo HOM05D002986 ORTHO05D003966 3.3e-19 100.5 84 56.0
ClCG05G013300 Citrullus lanatus HOM05D002986 ORTHO05D003966 4.3e-19 100.1 84 56.0
VMungo1309G1441 Vigna mungo HOM05D002986 ORTHO05D003966 4.3e-19 100.1 79 63.3
Cc05_g05060 Coffea canephora HOM05D002986 ORTHO05D007611 5.6e-19 99.8 86 55.8
MBI04_g11919_MAGBIO Magnolia biondii HOM05D002986 ORTHO05D003966 5.6e-19 99.8 84 53.6
SGA_v2.0_scaffold43G16408 Striga asiatica HOM05D002986 ORTHO05D003966 7.3e-19 99.4 84 56.0
SGA_v2.0_scaffold581G53045 Striga asiatica HOM05D002986 ORTHO05D003966 7.3e-19 99.4 84 56.0
ECA236G0037 Erigeron canadensis HOM05D002986 ORTHO05D003966 9.6e-19 99.0 294 79.6
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 9.6e-19 99.0 85 51.8
RcHm_v2.0_Chr1g0340661 Rosa chinensis HOM05D002986 ORTHO05D003966 1.2e-18 98.6 85 57.6
Migut.L00552 Erythranthe guttata HOM05D002986 ORTHO05D006011 1.6e-18 98.2 84 53.6
Potri.012G031600 Populus trichocarpa HOM05D002986 ORTHO05D003966 2.1e-18 97.8 86 58.1
EL10Ac1g01397 Beta vulgaris HOM05D002986 ORTHO05D003966 2.8e-18 97.4 83 51.8
AUR62024804 Chenopodium quinoa HOM05D002986 ORTHO05D003966 2.8e-18 97.4 85 50.6
Migut.N01566 Erythranthe guttata HOM05D002986 ORTHO05D006011 2.8e-18 97.4 84 53.6
MSTRG.28276 Avicennia marina HOM05D002986 ORTHO05D003966 3.6e-18 97.1 85 52.9
CAN.G1415.6 Capsicum annuum HOM05D002986 ORTHO05D003966 3.6e-18 97.1 85 52.9
CsaV3_3G027230 Cucumis sativus L. HOM05D002986 ORTHO05D003966 3.6e-18 97.1 84 53.6
Thhalv10013226m.g Eutrema salsugineum HOM05D002986 ORTHO05D003966 3.6e-18 97.1 82 51.2
Lj1g0024766 Lotus japonicus HOM05D002986 ORTHO05D003966 4.7e-18 96.7 84 63.1
Sed0020837 Sechium edule HOM05D002986 ORTHO05D007611 4.7e-18 96.7 83 57.8
MD07G1081300 Malus domestica HOM05D002986 ORTHO05D018174 6.2e-18 96.3 85 54.1
Psat3g140560 Pisum sativum HOM05D002986 ORTHO05D003966 1.1e-17 95.5 293 68.6
FvH4_7g08341 Fragaria vesca HOM05D002986 ORTHO05D003966 1.4e-17 95.1 293 80.2
Sc09g0006490 Simmondsia chinensis HOM05D002986 ORTHO05D003966 1.4e-17 95.1 82 52.4
Aa31LG11G13230 Aethionema arabicum HOM05D002986 ORTHO05D003966 5.2e-17 93.2 82 50.0
AL6G27360 Arabidopsis lyrata HOM05D002986 ORTHO05D003966 1.2e-16 92.0 82 48.8
Carub.0006s1462 Capsella rubella HOM05D002986 ORTHO05D003966 1.5e-16 91.7 82 48.8
Sp6g27760 Schrenkiella parvula HOM05D002986 ORTHO05D003966 2.0e-16 91.3 82 47.6
AT5G16420 Arabidopsis thaliana HOM05D002986 ORTHO05D003966 2.6e-16 90.9 82 47.6
PGR083G0469 Punica granatum HOM05D002986 ORTHO05D003966 2.6e-16 90.9 84 52.4
Ca_26027_v3 Cicer arietinum L. HOM05D002986 ORTHO05D003966 4.4e-16 90.1 295 67.1
Sabra12G0021100 Salix brachista HOM05D002986 ORTHO05D003966 7.6e-16 89.4 85 54.1
CARHR196830 Cardamine hirsuta HOM05D002986 ORTHO05D003966 1.3e-15 88.6 82 46.3
A03p07760 Brassica napus HOM05D002986 ORTHO05D003966 2.9e-15 87.4 80 46.2
C03p08980 Brassica napus HOM05D002986 ORTHO05D003966 2.9e-15 87.4 80 46.2
BolC3t13394H Brassica oleracea HOM05D002986 ORTHO05D003966 2.9e-15 87.4 80 46.2
BraA03t10103Z Brassica rapa HOM05D002986 ORTHO05D003966 2.9e-15 87.4 80 46.2
Phvul.008G101200 Phaseolus vulgaris HOM05D002986 ORTHO05D003966 2.9e-15 87.4 290 80.7
SHI13050 Sapria himalayana HOM05D002986 ORTHO05D003966 4.2e-14 83.6 82 48.8
ECA236G1421 Erigeron canadensis HOM05D002986 ORTHO05D003966 7.1e-14 82.8 82 47.6
Medtr6g055803 Medicago truncatula HOM05D002986 ORTHO05D003966 1.3e-12 78.6 53 66.0
CSS0003779 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 3.0e-12 77.4 294 77.6
AUR62032416 Chenopodium quinoa HOM05D002986 ORTHO05D013699 1.4e-09 68.6 44 65.9
Ah.05g169180 Amaranthus hybridus HOM05D002986 ORTHO05D007611 2.4e-09 67.8 45 64.4
MBI04_g06922_MAGBIO Magnolia biondii HOM05D013799 ORTHO05D013699 2.0e-08 64.7 42 69.0
Sopen06g004450 Solanum pennellii HOM05D002986 ORTHO05D013699 7.6e-08 62.8 44 65.9
Zm00001eb269290 Zea mays HOM05D002986 ORTHO05D003966 9.9e-08 62.4 79 40.5
RcHm_v2.0_Chr1g0340621 Rosa chinensis HOM05D014088 ORTHO05D013699 2.2e-07 61.2 46 58.7
Os06g0125300 Oryza sativa ssp. japonica HOM05D002986 ORTHO05D003966 2.9e-07 60.8 63 47.6
arahy.Tifrunner.gnm1.ann1.X6HLUE Arachis hypogaea HOM05D000003 ORTHO05D000006 4.9e-07 60.1 53 58.5
TWI60G0193 Tripterygium wilfordii HOM05D007085 ORTHO05D008828 8.4e-07 59.3 82 40.2
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 1.1e-06 58.9 83 38.6
SEGI_13320 Sequoiadendron giganteum HOM05D002986 ORTHO05D003966 1.4e-06 58.5 75 40.0
CAN.G1476.6 Capsicum annuum HOM05D000424 ORTHO05D000355 2.4e-06 57.8 83 38.6
Aqoxy1G03290 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 3.2e-06 57.4 83 36.1
arahy.Tifrunner.gnm1.ann1.2A943I Arachis hypogaea HOM05D000891 ORTHO05D000761 4.2e-06 57.0 79 36.7
CsaV3_4G032620 Cucumis sativus L. HOM05D007085 ORTHO05D008828 4.2e-06 57.0 80 37.5
FvH4_3g03080 Fragaria vesca HOM05D000891 ORTHO05D000761 4.2e-06 57.0 65 46.2
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 5.4e-06 56.6 83 36.1
arahy.Tifrunner.gnm1.ann1.72G1G0 Arachis hypogaea HOM05D000891 ORTHO05D000761 5.4e-06 56.6 79 38.0
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 5.4e-06 56.6 85 35.3
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 7.1e-06 56.2 83 39.8
Nitab4.5_0000425g0250 Nicotiana tabacum HOM05D000891 ORTHO05D000761 9.3e-06 55.8 81 37.0
Sp3g12850 Schrenkiella parvula HOM05D007085 ORTHO05D008828 9.3e-06 55.8 80 38.8
Sed0002576 Sechium edule HOM05D007085 ORTHO05D008828 9.3e-06 55.8 80 38.8


User provided reference genes

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