Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 5.5e-74 280.8 133 100.0
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 5.5e-74 280.8 133 100.0
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 5.5e-66 254.2 133 88.7
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 7.1e-66 253.8 133 88.0
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 7.9e-65 250.4 133 85.0
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.0e-64 250.0 133 85.0
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 6.7e-64 247.3 133 85.7
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.5e-63 246.1 133 85.0
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 3.3e-63 245.0 129 85.3
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 6.3e-62 240.7 130 80.8
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 6.3e-62 240.7 133 82.0
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 80.5
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.8e-61 239.2 130 80.8
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 3.1e-61 238.4 129 79.8
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 3.1e-61 238.4 133 79.7
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 3.1e-61 238.4 130 79.2
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 80.5
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 78.2
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 6.9e-61 237.3 133 81.2
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 6.9e-61 237.3 130 79.2
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.5e-60 236.1 133 78.2
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 2.0e-60 235.7 130 79.2
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 3.4e-60 235.0 130 79.2
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 4.5e-60 234.6 129 79.1
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 81.5
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 78.9
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 78.5
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 78.5
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 78.5
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 7.7e-60 233.8 130 77.7
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 7.7e-60 233.8 129 82.2
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.0e-59 233.4 130 77.7
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 77.7
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.3e-59 233.0 133 79.7
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 2.2e-59 232.3 130 80.8
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 3.8e-59 231.5 133 77.4
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 8.5e-59 230.3 130 76.9
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.1e-58 229.9 131 77.1
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 1.4e-58 229.6 130 75.4
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 2.5e-58 228.8 131 76.3
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 2.5e-58 228.8 130 77.7
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 3.2e-58 228.4 129 76.7
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 4.2e-58 228.0 130 76.2
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 4.2e-58 228.0 133 78.2
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.2e-57 226.5 135 76.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 1.2e-57 226.5 135 76.3
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 1.2e-57 226.5 133 75.9
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.2e-57 226.5 133 75.2
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.7e-57 225.3 133 75.2
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 2.7e-57 225.3 131 75.6
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 2.7e-57 225.3 131 75.6
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 78.5
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.6e-57 224.9 135 74.8
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 6.1e-57 224.2 133 75.2
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 6.1e-57 224.2 133 74.4
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 6.1e-57 224.2 133 74.4
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 7.9e-57 223.8 135 74.1
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 1.0e-56 223.4 131 74.8
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 1.8e-56 222.6 130 75.4
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 1.8e-56 222.6 130 75.4
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 3.9e-56 221.5 130 75.4
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 5.1e-56 221.1 175 61.1
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 8.8e-56 220.3 130 76.2
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 2.0e-55 219.2 130 76.2
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.5e-55 218.8 129 73.6
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 3.3e-55 218.4 133 72.2
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 5.7e-55 217.6 131 74.0
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 7.4e-55 217.2 130 73.1
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 9.7e-55 216.9 137 74.5
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.3e-54 216.5 129 73.6
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 72.2
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.7e-54 216.1 129 73.6
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 1.7e-54 216.1 132 76.5
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.2e-54 215.7 133 72.2
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 3.7e-54 214.9 129 72.9
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 1.4e-53 213.0 131 70.2
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 9.1e-53 210.3 129 73.6
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.0e-52 209.1 131 68.7
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 2.5e-50 202.2 131 69.5
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 9.4e-50 200.3 130 68.5
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 2.7e-49 198.7 130 68.5
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 7.9e-49 197.2 227 47.6
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.9e-48 194.9 131 64.1
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.1e-48 194.5 131 64.9
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 8.8e-48 193.7 130 65.4
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 2.0e-47 192.6 126 73.0
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 2.0e-47 192.6 133 67.7
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 9.7e-47 190.3 131 64.1
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 62.6
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 62.6
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 62.6
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 1.8e-45 186.0 131 61.8
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 1.8e-45 186.0 131 61.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 2.4e-45 185.7 131 62.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 3.1e-45 185.3 131 62.6
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 3.1e-45 185.3 131 62.6
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 9.1e-45 183.7 131 62.6
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 5.9e-44 181.0 131 60.3
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.7e-43 179.5 131 61.1
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 6.1e-41 171.0 131 61.8
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 3.9e-40 168.3 156 53.8
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 2.0e-39 166.0 129 53.5
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 4.4e-39 164.9 130 53.1
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 2.8e-38 162.2 132 55.3
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 3.5e-36 155.2 136 50.7
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 3.5e-36 155.2 133 54.9
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.3e-35 153.3 130 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 1.7e-35 152.9 129 54.3
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 2.2e-35 152.5 85 78.8
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 2.9e-35 152.1 85 76.5
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 8.5e-35 150.6 130 50.0
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 1.2e-31 140.2 129 48.8
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.6e-31 139.0 102 58.8
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 4.8e-30 134.8 80 72.5
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 5.0e-27 124.8 69 76.8
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.6e-25 119.8 64 78.1
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 8.8e-24 114.0 109 53.2
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-20 103.6 72 65.3
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 3.3e-18 95.5 124 39.5
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.8e-17 92.4 54 64.8
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.9e-14 81.6 48 77.1
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.8e-13 79.7 48 72.9
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.3e-11 72.8 54 57.4
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 2.9e-11 72.4 133 33.8
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-09 67.0 43 67.4
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 8.0e-09 64.3 48 56.2


User provided reference genes

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