Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 9.7e-40 166.4 86 100.0
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 1.1e-38 162.9 86 97.7
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 6.8e-17 90.5 70 71.4
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 7.5e-16 87.0 70 72.9
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 7.5e-16 87.0 70 72.9
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.3e-15 86.3 87 60.9
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 1.1e-14 83.2 79 62.0
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 2.4e-14 82.0 85 56.5
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 4.1e-14 81.3 76 59.2
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 7.0e-14 80.5 73 63.0
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 7.0e-14 80.5 73 63.0
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 7.0e-14 80.5 73 63.0
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.0e-13 79.0 76 53.9
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 4.5e-13 77.8 84 52.4
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 5.9e-13 77.4 74 59.5
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.3e-12 75.5 78 56.4
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 2.3e-12 75.5 85 52.9
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.8e-12 74.7 69 62.3
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 5.0e-12 74.3 69 55.1
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 6.6e-12 73.9 68 61.8
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 8.6e-12 73.6 72 61.1
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 1.9e-11 72.4 71 54.9
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.3e-11 71.6 74 56.8
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.2e-11 71.2 71 53.5
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.5e-11 70.9 71 52.1
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.5e-11 70.9 71 52.1
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 5.5e-11 70.9 67 64.2
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.2e-11 70.5 80 53.8
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 9.5e-11 70.1 72 62.5
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.5e-11 70.1 80 48.8
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 9.5e-11 70.1 74 54.1
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 1.2e-10 69.7 67 58.2
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-10 69.3 71 54.9
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.6e-10 69.3 84 46.4
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 1.6e-10 69.3 61 63.9
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.1e-10 68.9 74 50.0
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 3.6e-10 68.2 76 53.9
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.0e-10 67.0 72 52.8
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.0e-10 67.0 72 52.8
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 8.0e-10 67.0 67 50.7
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.0e-09 66.6 69 55.1
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.4e-09 66.2 78 50.0
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.8e-09 65.9 75 52.0
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 1.8e-09 65.9 53 66.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 5.2e-09 64.3 74 50.0
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.8e-09 63.9 61 54.1
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 6.8e-09 63.9 61 54.1
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 6.8e-09 63.9 75 53.3
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 8.9e-09 63.5 77 50.6
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 1.5e-08 62.8 51 51.0
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 2.0e-08 62.4 63 57.1
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.0e-08 62.4 72 51.4
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 2.6e-08 62.0 69 59.4
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.6e-08 62.0 61 52.5
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.6e-08 62.0 78 46.2
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 3.4e-08 61.6 67 50.7
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.4e-08 61.6 72 51.4
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.4e-08 61.6 72 51.4
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 3.4e-08 61.6 67 52.2
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 4.4e-08 61.2 59 55.9
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 4.4e-08 61.2 62 56.5
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 5.7e-08 60.8 72 51.4
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 1.3e-07 59.7 55 60.0
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.3e-07 59.7 74 47.3
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 1.7e-07 59.3 61 57.4
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.7e-07 59.3 73 47.9
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 2.2e-07 58.9 59 54.2
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 2.2e-07 58.9 59 54.2
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 3.7e-07 58.2 50 60.0
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 3.7e-07 58.2 43 60.5
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 3.7e-07 58.2 43 62.8
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 4.9e-07 57.8 88 51.1
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.9e-07 57.8 77 48.1
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 8.3e-07 57.0 43 60.5
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 1.1e-06 56.6 67 43.3
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.1e-06 56.6 53 56.6
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 1.1e-06 56.6 71 46.5
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.1e-06 56.6 74 51.4
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 1.4e-06 56.2 44 65.9
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 1.4e-06 56.2 75 45.3
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 1.8e-06 55.8 90 45.6
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.8e-06 55.8 70 44.3
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.8e-06 55.8 46 56.5
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 1.8e-06 55.8 70 50.0
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.1e-06 55.1 72 43.1
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 5.4e-06 54.3 72 41.7
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 5.4e-06 54.3 53 50.9
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 9.2e-06 53.5 43 55.8
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 9.2e-06 53.5 43 55.8
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 9.2e-06 53.5 57 47.4


User provided reference genes

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