Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.5e-81 306.2 159 100.0
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 1.9e-73 279.3 159 94.3
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 9.1e-68 260.4 158 89.2
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 3.7e-61 238.4 159 79.9
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 6.3e-61 237.7 159 79.9
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 2.4e-60 235.7 159 79.2
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 4.1e-60 235.0 159 78.0
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 7.7e-59 230.7 158 78.5
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 3.8e-58 228.4 159 76.1
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 3.8e-58 228.4 159 77.4
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 3.8e-58 228.4 159 76.1
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 3.8e-58 228.4 159 74.2
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 6.6e-58 227.6 159 76.1
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 4.2e-57 224.9 159 74.8
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 7.2e-57 224.2 159 74.2
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 9.5e-57 223.8 159 74.8
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 4.7e-56 221.5 153 75.2
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 8.0e-56 220.7 159 73.6
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 8.0e-56 220.7 154 76.0
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 1.0e-55 220.3 153 75.2
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 1.4e-55 219.9 159 71.7
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.8e-55 219.5 158 72.2
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 2.3e-55 219.2 158 72.8
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 3.0e-55 218.8 159 72.3
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 3.0e-55 218.8 159 71.7
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 4.0e-55 218.4 159 72.3
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 8.9e-55 217.2 159 71.1
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.2e-54 216.9 159 71.7
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 1.2e-54 216.9 159 71.7
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 3.4e-54 215.3 152 75.0
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 3.4e-54 215.3 159 69.8
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.4e-54 215.3 159 69.8
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 7.5e-54 214.2 159 69.2
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.3e-53 213.4 159 69.2
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 6.3e-53 211.1 160 70.6
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 6.3e-53 211.1 159 69.8
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 1.1e-52 210.3 150 74.0
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 1.1e-52 210.3 150 72.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 1.1e-52 210.3 150 73.3
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.1e-52 210.3 160 70.0
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 1.1e-52 210.3 159 69.8
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 2.4e-52 209.1 148 74.3
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 3.2e-52 208.8 150 72.7
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 3.2e-52 208.8 152 69.7
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 4.1e-52 208.4 152 71.1
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 9.2e-52 207.2 151 72.2
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 1.2e-51 206.8 152 70.4
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 1.6e-51 206.5 150 70.0
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 2.7e-51 205.7 148 72.3
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 3.5e-51 205.3 152 71.1
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 7.8e-51 204.1 159 69.8
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.7e-50 203.0 152 69.1
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 3.9e-50 201.8 150 69.3
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 6.6e-50 201.1 149 69.8
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 1.1e-49 200.3 137 75.9
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.5e-49 199.9 145 71.0
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 2.5e-49 199.1 158 68.4
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 7.3e-49 197.6 162 67.9
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 2.8e-48 195.7 149 71.1
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 3.6e-48 195.3 145 69.7
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 6.2e-48 194.5 148 66.9
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 8.0e-48 194.1 149 69.1
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 1.8e-47 193.0 148 68.2
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 3.4e-46 188.7 147 66.7
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 3.4e-46 188.7 147 66.7
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 3.4e-46 188.7 150 67.3
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 5.8e-46 188.0 136 72.1
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 7.5e-46 187.6 137 72.3
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 9.8e-46 187.2 159 64.8
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 8.3e-45 184.1 152 62.5
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 1.4e-44 183.3 160 61.9
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 3.2e-44 182.2 190 57.4
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 4.1e-44 181.8 150 67.3
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 7.0e-44 181.0 150 66.0
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 1.2e-43 180.3 113 77.9
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 2.0e-43 179.5 118 83.9
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 2.0e-43 179.5 164 57.9
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 7.8e-43 177.6 111 78.4
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 1.3e-42 176.8 159 58.5
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 3.9e-42 175.3 147 65.3
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 2.5e-41 172.6 111 75.7
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 5.6e-41 171.4 149 63.8
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 2.8e-40 169.1 155 62.6
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.5e-38 163.3 139 64.0
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 6.4e-37 157.9 147 59.2
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.9e-36 156.4 144 56.9
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 4.1e-36 155.2 159 54.1
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 3.5e-35 152.1 161 53.4
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 1.0e-34 150.6 159 52.2
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.7e-34 149.8 156 53.2
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 2.3e-34 149.4 144 54.2
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 3.0e-34 149.1 165 50.3
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 5.1e-34 148.3 156 52.6
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 6.6e-34 147.9 160 53.1
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 6.6e-34 147.9 150 54.0
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 8.6e-34 147.5 160 51.9
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 8.6e-34 147.5 160 53.8
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.1e-33 147.1 143 52.4
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.5e-33 146.7 160 51.2
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 1.5e-33 146.7 160 51.2
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 7.3e-33 144.4 156 51.3
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.2e-32 143.7 156 51.3
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.2e-32 143.7 156 51.3
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 2.1e-32 142.9 145 49.0
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.6e-32 142.1 132 57.6
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 8.1e-32 141.0 111 65.8
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 1.1e-31 140.6 148 54.1
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 2.2e-29 132.9 109 63.3
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 7.1e-28 127.9 139 50.4
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 5.1e-26 121.7 65 92.3
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 3.6e-24 115.5 150 46.7
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 8.1e-24 114.4 156 50.0
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 8.1e-24 114.4 81 67.9
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 3.8e-21 105.5 93 63.4
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 6.2e-16 88.2 159 42.8
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 3.4e-14 82.4 75 54.7
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 6.4e-13 78.2 98 49.0
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 3.9e-10 68.9 109 43.1
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 4.3e-09 65.5 42 81.0
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 9.0e-07 57.8 39 71.8
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 2.0e-06 56.6 34 79.4
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 2.0e-06 56.6 152 30.9


User provided reference genes

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