Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 1.0e-70 270.0 141 100.0
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.8e-54 216.1 141 81.6
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.9e-51 204.1 111 97.3
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.9e-51 204.1 111 97.3
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.9e-51 204.1 111 97.3
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.9e-51 204.1 111 97.3
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 6.9e-51 204.1 111 97.3
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 1.1e-45 186.8 106 85.8
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 1.3e-44 183.3 96 92.7
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 3.7e-44 181.8 128 75.0
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 1.1e-43 180.3 101 90.1
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 5.3e-43 177.9 96 90.6
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 1.1e-40 170.2 140 65.7
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 9.3e-40 167.2 93 88.2
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 9.3e-40 167.2 93 88.2
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 9.3e-40 167.2 93 88.2
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 9.3e-40 167.2 93 88.2
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.0e-38 163.7 89 89.9
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.0e-38 163.7 89 89.9
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 7.4e-37 157.5 97 80.4
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 1.4e-35 153.3 80 91.2
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 2.6e-34 149.1 85 87.1
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 1.0e-33 147.1 87 90.8
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 6.3e-28 127.9 82 84.1
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 1.4e-27 126.7 62 93.5
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 6.9e-27 124.4 109 58.7
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-26 122.5 59 98.3
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 3.4e-26 122.1 67 86.6
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 5.9e-26 121.3 99 70.7
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 4.6e-23 111.7 91 67.0
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.9e-22 108.6 95 62.1
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 3.3e-21 105.5 60 83.3
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-21 105.1 72 76.4
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 5.7e-21 104.8 86 65.1
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 1.4e-19 100.1 78 64.1
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 1.8e-19 99.8 66 75.8
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 9.1e-19 97.4 59 83.1
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 1.5e-18 96.7 53 83.0
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.5e-18 95.1 59 81.4
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 2.2e-17 92.8 56 80.4
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 4.2e-16 88.6 115 53.9
AL2G21830 Arabidopsis lyrata HOM05D000963 ORTHO05D026832 3.0e-14 82.4 45 93.3
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 5.2e-14 81.6 57 73.7
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 9.7e-13 77.4 53 75.5
Phvul.003G113100 Phaseolus vulgaris HOM05D000963 ORTHO05D026832 8.2e-12 74.3 44 86.4
CsaV3_UNG207940 Cucumis sativus L. HOM05D019464 ORTHO05D015988 1.1e-11 73.9 123 39.8
SGA_v2.0_scaffold507G52591 Striga asiatica HOM05D000963 ORTHO05D005131 1.1e-11 73.9 65 67.7
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 1.1e-11 73.9 51 76.5
Sopen06g013430 Solanum pennellii HOM05D000963 ORTHO05D026832 1.4e-11 73.6 40 92.5
EL10Ac1g01995 Beta vulgaris HOM05D000411 ORTHO05D000310 7.0e-11 71.2 43 86.0
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.0e-11 71.2 86 48.8
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 4.5e-10 68.6 49 69.4
Solyc11g045440.1 Solanum lycopersicum HOM05D002965 ORTHO05D011846 4.5e-10 68.6 120 38.3
arahy.Tifrunner.gnm1.ann1.9MQ674 Arachis hypogaea HOM05D000963 ORTHO05D005131 7.7e-10 67.8 45 84.4
Sopen06g013420 Solanum pennellii HOM05D000963 ORTHO05D026832 1.0e-09 67.4 39 84.6
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.8e-09 65.5 97 44.3
Nitab4.5_0001152g0470 Nicotiana tabacum HOM05D019464 ORTHO05D015988 1.1e-08 63.9 76 48.7
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.5e-08 63.5 31 90.3
BcaB02g10431 Brassica carinata HOM05D002965 ORTHO05D015988 3.2e-08 62.4 65 53.8
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.2e-08 61.2 37 75.7
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 9.4e-08 60.8 53 56.6
Sc11g0003820 Simmondsia chinensis HOM05D000963 ORTHO05D005131 8.0e-07 57.8 41 70.7
SGA_v2.0_scaffold379G50347 Striga asiatica HOM05D008299 ORTHO05D010400 1.0e-06 57.4 36 80.6
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 3.0e-06 55.8 50 60.0


User provided reference genes

Program Settings