Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 4.0e-287 990.7 492 100.0
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 5.0e-282 973.8 492 98.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.3e-223 777.7 493 78.3
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 6.9e-223 777.3 430 87.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 9.0e-223 776.9 434 87.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 9.9e-222 773.5 432 86.3
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 2.9e-221 771.9 432 85.2
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 3.8e-221 771.5 432 85.4
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.1e-220 770.0 432 85.4
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 3.2e-220 768.5 433 84.5
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.9e-218 761.5 435 85.5
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 3.3e-217 758.4 455 79.1
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.8e-215 752.7 435 84.8
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 3.1e-215 751.9 475 76.8
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 4.0e-215 751.5 491 75.8
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.2e-214 750.0 492 75.2
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 5.8e-214 747.7 492 75.0
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.4e-212 743.0 495 74.9
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.4e-212 743.0 495 73.9
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.4e-212 742.3 465 78.1
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 4.2e-212 741.5 473 76.5
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.2e-211 740.0 495 75.8
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.1e-211 739.2 497 74.6
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.7e-211 738.8 486 74.5
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 6.0e-211 737.6 492 74.6
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 7.9e-211 737.3 481 75.5
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 7.9e-211 737.3 499 73.9
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.0e-210 736.9 437 80.1
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.1e-209 733.4 493 74.2
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.5e-209 733.0 494 74.5
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.9e-209 732.6 494 72.3
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 3.3e-209 731.9 493 74.2
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 4.3e-209 731.5 494 72.9
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 4.3e-209 731.5 492 73.0
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 6.2e-208 727.6 503 72.2
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.2e-206 723.4 498 71.9
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.8e-206 721.1 424 80.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 7.6e-206 720.7 532 67.7
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.0e-205 720.3 493 72.8
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 3.8e-205 718.4 445 77.1
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.1e-204 716.8 431 78.4
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 2.5e-204 715.7 492 71.1
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 3.2e-204 715.3 493 72.0
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.2e-204 715.3 480 74.8
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 3.2e-204 715.3 465 74.0
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.2e-204 714.9 469 73.8
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 7.1e-204 714.1 492 71.1
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 9.3e-204 713.8 494 72.9
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 9.3e-204 713.8 490 71.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 3.5e-203 711.8 501 70.3
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 3.5e-203 711.8 498 71.5
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 3.5e-203 711.8 492 71.7
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.5e-203 711.8 461 75.7
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 6.0e-203 711.1 521 68.7
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 6.0e-203 711.1 488 71.3
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 7.9e-203 710.7 496 71.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.0e-202 708.8 446 75.6
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 3.0e-202 708.8 500 70.6
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.1e-202 708.0 483 72.3
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 6.7e-202 707.6 458 73.8
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 8.7e-202 707.2 495 71.3
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.1e-201 706.8 497 71.0
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.1e-201 706.8 497 71.0
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.1e-201 706.8 496 70.4
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.5e-201 706.4 466 73.8
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 2.5e-201 705.7 443 76.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.3e-201 705.3 476 71.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 4.3e-201 704.9 457 74.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 7.4e-201 704.1 498 70.3
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 2.2e-200 702.6 492 70.7
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.2e-200 702.6 492 70.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.8e-200 702.2 489 73.4
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 3.7e-200 701.8 497 70.4
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 3.7e-200 701.8 497 70.4
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 6.3e-200 701.0 459 73.9
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 8.2e-200 700.7 439 77.2
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.1e-199 700.3 494 70.2
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.4e-199 699.9 492 70.1
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 5.3e-199 698.0 492 70.1
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 5.3e-199 698.0 492 69.9
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 9.0e-199 697.2 501 71.5
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.3e-197 693.3 403 81.4
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 6.1e-195 684.5 428 76.6
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 3.0e-194 682.2 445 74.2
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 4.3e-193 678.3 429 74.8
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 3.7e-192 675.2 401 79.6
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.4e-191 673.3 405 78.5
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 4.5e-190 668.3 460 72.4
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 9.4e-188 660.6 378 83.1
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.6e-187 659.8 481 68.4
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.6e-185 652.5 488 66.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.3e-184 650.2 504 65.5
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.8e-181 638.6 474 69.0
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 3.2e-180 635.6 448 69.2
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.5e-177 626.7 378 78.3
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.0e-177 626.3 411 73.7
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 5.7e-177 624.8 493 66.5
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 8.5e-173 610.9 494 64.6
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.2e-171 607.1 394 74.4
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.3e-170 602.8 441 66.9
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 4.8e-168 595.1 493 60.6
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.6e-166 590.1 487 63.4
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.6e-166 590.1 341 80.9
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 8.0e-163 577.8 378 74.3
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.3e-162 576.2 390 70.8
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 2.3e-162 576.2 485 58.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.6e-158 563.5 407 68.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.3e-157 560.5 474 62.0
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 1.9e-156 556.6 380 72.1
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 9.5e-148 527.7 472 57.4
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.5e-145 520.4 326 76.4
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 3.2e-143 512.7 464 56.0
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.9e-124 450.3 256 82.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 8.1e-123 444.9 348 67.0
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 8.4e-120 434.9 297 71.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 8.4e-120 434.9 297 71.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 6.0e-118 428.7 391 54.5
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.9e-109 399.4 299 66.6
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.3e-104 384.4 264 71.2
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 2.2e-104 383.6 285 67.0
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 3.2e-103 379.8 270 70.4
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 3.0e-101 373.2 294 65.3
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 6.2e-91 339.0 386 46.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 7.4e-84 315.5 208 73.6
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 5.0e-80 302.8 336 46.4
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.8e-75 287.0 220 67.7
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.9e-72 276.9 248 56.9
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.4e-69 268.1 566 32.9
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.7e-52 209.5 465 34.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 9.4e-47 192.2 110 82.7
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 4.2e-39 166.8 112 69.6
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 4.9e-35 153.3 110 69.1
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.2e-33 148.7 82 79.3
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 8.3e-27 125.9 87 73.6
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 8.9e-21 105.9 74 70.3
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 5.8e-20 103.2 69 71.0
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 5.8e-20 103.2 69 71.0
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 5.8e-20 103.2 69 71.0
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 7.5e-20 102.8 68 72.1
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.3e-19 102.1 60 75.0
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 2.2e-19 101.3 69 69.6
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.9e-19 100.9 70 68.6
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 3.7e-19 100.5 69 71.0
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 4.9e-19 100.1 69 68.1
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 4.9e-19 100.1 67 71.6
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 6.4e-19 99.8 68 69.1
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 8.3e-19 99.4 69 68.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 1.7e-16 91.7 53 75.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.2e-14 85.5 87 56.3
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.8e-13 79.7 69 59.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 6.0e-09 66.6 41 78.0
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 6.6e-08 63.2 67 53.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 7.3e-07 59.7 43 62.8


User provided reference genes

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