Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 3.0e-204 714.9 349 100.0
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 4.9e-199 697.6 347 97.4
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 4.5e-160 568.2 341 80.6
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 2.9e-159 565.5 334 80.2
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 7.2e-158 560.8 330 81.5
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 1.6e-157 559.7 341 80.1
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 2.3e-156 555.8 327 81.3
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 1.5e-155 553.1 330 80.3
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 1.5e-155 553.1 334 78.4
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 9.1e-153 543.9 319 81.8
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 1.5e-152 543.1 330 79.1
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 3.9e-148 528.5 327 75.8
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 5.2e-148 528.1 325 76.9
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 8.8e-148 527.3 339 74.9
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 2.0e-147 526.2 339 74.6
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 9.1e-145 517.3 323 75.5
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 1.7e-143 513.1 323 74.3
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.9e-143 512.3 323 74.3
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 8.5e-143 510.8 326 75.2
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 8.5e-143 510.8 323 73.7
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 8.5e-143 510.8 327 74.3
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.5e-142 510.0 323 74.0
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 3.2e-142 508.8 327 72.5
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 4.2e-142 508.4 325 74.8
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 1.6e-141 506.5 328 73.8
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 4.7e-141 505.0 324 72.2
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 1.0e-140 503.8 328 72.3
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 1.0e-140 503.8 327 73.4
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 1.8e-140 503.1 326 73.6
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 6.7e-140 501.1 316 75.6
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 1.2e-139 500.4 325 73.2
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 1.2e-139 500.4 325 73.8
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 2.0e-139 499.6 324 76.9
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 2.6e-139 499.2 320 75.6
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 2.6e-139 499.2 326 72.4
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 5.7e-139 498.0 325 73.2
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 7.5e-139 497.7 323 73.1
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 2.4e-137 492.7 340 71.8
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.3e-137 491.5 332 71.1
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 2.0e-136 489.6 318 73.0
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 5.0e-135 485.0 320 71.6
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 3.2e-134 482.3 325 70.2
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 2.1e-133 479.6 321 70.7
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 8.0e-133 477.6 320 70.3
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 2.3e-132 476.1 342 67.0
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 2.3e-132 476.1 328 68.0
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 6.8e-132 474.6 329 68.7
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 1.5e-131 473.4 338 67.5
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 2.0e-131 473.0 330 68.5
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 4.4e-131 471.9 331 68.0
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 5.7e-131 471.5 319 69.9
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 5.7e-131 471.5 321 69.8
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 7.5e-131 471.1 318 69.8
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 9.8e-131 470.7 309 71.2
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 1.3e-130 470.3 317 71.6
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 1.7e-130 469.9 318 69.8
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 2.2e-130 469.5 322 70.8
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 2.2e-130 469.5 335 67.2
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 4.8e-130 468.4 331 67.4
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 6.3e-130 468.0 314 71.3
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 6.3e-130 468.0 322 68.6
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 8.3e-130 467.6 318 70.4
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 4.1e-129 465.3 321 68.2
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 4.1e-129 465.3 321 68.2
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 2.0e-128 463.0 321 67.3
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 3.5e-128 462.2 318 68.2
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 3.5e-128 462.2 318 68.2
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 3.5e-128 462.2 318 68.2
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 4.5e-128 461.8 309 70.2
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 4.5e-128 461.8 309 70.6
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 5.9e-128 461.5 322 68.3
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 5.9e-128 461.5 309 70.9
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 1.7e-127 459.9 333 66.1
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 8.5e-127 457.6 333 66.7
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 3.2e-126 455.7 322 68.3
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 5.5e-126 454.9 315 67.9
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 2.1e-125 453.0 321 67.0
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 2.6e-123 446.0 327 65.4
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 2.2e-122 443.0 322 69.3
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.9e-122 441.8 324 65.1
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 3.1e-121 439.1 309 67.0
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 7.0e-121 438.0 339 63.1
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 9.2e-121 437.6 300 68.0
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 3.5e-120 435.6 320 66.2
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 8.6e-119 431.0 319 65.8
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 1.4e-116 423.7 318 63.2
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 6.8e-116 421.4 322 62.7
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 2.3e-108 396.4 333 59.5
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 7.8e-104 381.3 326 58.6
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 2.8e-101 372.9 312 58.0
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 9.9e-99 364.4 313 55.9
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 1.6e-96 357.1 312 58.0
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 1.7e-95 353.6 287 62.4
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 4.6e-88 328.9 205 73.2
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 2.5e-86 323.2 312 52.6
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 2.4e-84 316.6 336 50.6
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 3.8e-82 309.3 309 50.8
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 6.4e-82 308.5 247 61.9
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 4.2e-81 305.8 203 69.5
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 3.3e-78 296.2 216 68.5
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.8e-68 263.8 159 76.7
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 1.6e-64 250.8 189 64.0
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 2.1e-64 250.4 177 66.1
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.6e-64 249.2 157 71.3
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 7.4e-62 241.9 134 79.9
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 4.3e-54 216.1 155 67.1
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.8e-52 210.7 285 43.9
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 2.2e-50 203.8 243 47.7
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.1e-46 191.4 142 65.5
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 7.7e-43 178.7 126 72.2
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 2.7e-40 170.2 90 82.2
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.9e-35 152.5 132 60.6
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.8e-23 114.4 136 48.5
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.7e-21 107.8 112 53.6
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 5.3e-20 102.8 194 37.6
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 7.7e-19 99.0 72 62.5
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 2.8e-13 80.5 119 39.5
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 1.4e-12 78.2 70 57.1
Cre17.g737650 Chlamydomonas reinhardtii HOM05D038115 ORTHO05D008132 2.9e-10 70.5 149 34.9
MCO05G745 Micromonas commoda HOM05D006598 ORTHO05D269324 1.8e-07 61.2 179 30.2
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 8.9e-07 58.9 195 27.7
Cre16.g655900 Chlamydomonas reinhardtii HOM05D006598 ORTHO05D008132 9.8e-06 55.5 214 27.6


User provided reference genes

Program Settings