Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 0.0e+00 1288.1 640 100.0
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 0.0e+00 1224.5 620 98.4
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.0e-290 1003.0 649 78.1
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 9.4e-289 996.5 645 77.4
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.4e-287 992.6 649 76.9
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.8e-287 992.3 648 76.1
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.8e-287 992.3 648 76.1
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 8.8e-287 989.9 645 76.6
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 7.4e-286 986.9 649 76.6
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 6.3e-285 983.8 649 75.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.8e-284 982.2 649 76.1
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.8e-284 982.2 649 76.0
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 2.8e-256 888.6 678 68.1
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 8.0e-256 887.1 644 69.7
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 3.1e-252 875.2 647 68.8
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 5.6e-249 864.4 644 68.3
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.8e-248 862.1 645 67.4
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 5.8e-246 854.4 672 65.9
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 5.8e-246 854.4 644 68.3
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 9.8e-246 853.6 647 66.0
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 2.9e-245 852.0 648 66.4
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.1e-241 840.1 623 68.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 9.5e-241 837.0 639 65.4
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 2.1e-240 835.9 639 65.6
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 6.2e-240 834.3 625 67.8
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.1e-239 833.6 628 67.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.1e-239 833.6 645 67.3
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.5e-238 829.7 647 65.2
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.7e-237 826.2 646 63.3
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 5.4e-236 821.2 634 64.2
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.2e-235 820.1 645 63.3
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.9e-234 815.1 650 63.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 6.6e-234 814.3 650 63.8
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 9.5e-233 810.4 653 63.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.1e-232 809.3 648 63.7
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 2.0e-230 802.7 621 65.7
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 4.4e-230 801.6 628 64.2
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 9.9e-230 800.4 648 62.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.9e-229 798.9 639 63.7
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 2.9e-229 798.9 639 63.5
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 2.9e-229 798.9 645 62.9
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 4.9e-229 798.1 639 63.7
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.9e-228 796.2 639 63.2
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 2.4e-228 795.8 649 62.7
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 3.2e-228 795.4 640 63.4
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.1e-228 795.0 626 66.1
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 5.4e-228 794.7 641 63.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 7.1e-228 794.3 653 62.6
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.6e-227 793.1 649 62.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 2.1e-227 792.7 634 63.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 6.0e-227 791.2 639 63.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 4.3e-225 785.0 660 61.5
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 9.6e-225 783.9 644 61.8
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 4.7e-224 781.6 641 62.6
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 4.7e-224 781.6 644 61.5
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 8.1e-224 780.8 660 62.9
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 3.1e-223 778.9 647 62.1
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.0e-222 776.2 653 61.9
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 3.4e-222 775.4 639 61.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 4.4e-222 775.0 650 62.0
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.9e-221 772.3 652 60.7
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 4.9e-221 771.5 651 61.3
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 2.4e-220 769.2 651 61.3
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 9.3e-220 767.3 658 58.4
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.7e-219 765.8 647 60.6
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 2.7e-219 765.8 641 61.5
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 3.5e-219 765.4 538 70.3
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 6.0e-219 764.6 649 61.0
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.0e-218 763.8 646 60.5
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 3.0e-218 762.3 655 60.3
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.9e-217 759.6 612 62.4
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 2.5e-217 759.2 652 59.0
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 3.3e-217 758.8 647 60.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 3.1e-215 752.3 649 59.8
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 4.0e-215 751.9 647 59.8
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 9.0e-215 750.7 615 63.1
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.6e-214 749.2 627 61.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 5.4e-212 741.5 646 59.4
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 9.3e-212 740.7 647 58.6
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 5.6e-209 731.5 652 58.3
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 7.6e-206 721.1 650 57.8
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.8e-202 709.9 644 56.8
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 3.0e-202 709.1 628 57.0
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.1e-196 688.0 654 53.8
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 5.3e-191 671.8 644 55.0
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.7e-181 640.2 569 57.8
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 5.0e-181 638.6 662 52.7
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 9.7e-177 624.4 592 53.5
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 5.7e-169 598.6 486 61.7
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.0e-165 587.8 468 63.9
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 4.2e-156 555.8 482 59.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.2e-156 555.1 577 53.9
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 4.7e-155 552.4 664 48.3
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.2e-145 521.2 515 59.2
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.2e-144 516.9 592 48.3
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 3.1e-143 513.1 630 44.1
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.6e-137 493.4 619 45.1
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.7e-133 480.7 635 42.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 6.2e-131 472.2 458 55.2
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.0e-125 454.9 253 85.8
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.1e-114 418.3 562 46.4
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 4.0e-114 416.4 387 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.4e-95 354.8 624 37.3
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 4.6e-94 349.7 375 49.9
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 7.9e-94 349.0 178 89.3
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.8e-90 337.8 464 44.4
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 2.8e-83 313.9 490 45.9
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.6e-81 305.8 197 72.1
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.3e-75 288.5 419 41.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 3.7e-75 287.0 356 45.5
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.0e-56 223.4 170 64.7
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.5e-55 221.1 104 96.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.3e-53 214.5 106 88.7
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 5.1e-53 213.4 246 50.0
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.5e-39 167.9 194 49.0
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 8.0e-38 162.9 91 91.2
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.0e-37 162.5 91 91.2
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 2.4e-34 151.4 200 40.5
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 3.1e-34 151.0 137 57.7
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 4.1e-34 150.6 178 45.5
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-30 138.7 154 50.6
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 8.3e-27 126.3 86 68.6
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 3.1e-26 124.4 58 89.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-24 118.2 83 66.3
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 5.6e-23 113.6 83 66.3
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.2e-20 105.9 102 49.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 5.7e-20 103.6 72 66.7
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 79 57.0
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 6.6e-16 90.1 79 57.0
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 8.6e-16 89.7 79 55.7
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 79 54.4
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 79 54.4
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.8e-14 84.7 79 54.4
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.1e-10 72.8 93 46.2
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 2.4e-10 71.6 93 45.2
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 3.6e-06 57.8 115 30.4


User provided reference genes

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