Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 9.3e-150 533.5 266 100.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 9.1e-129 463.8 236 98.7
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.8e-92 343.2 266 68.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.8e-92 343.2 267 69.7
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 4.0e-92 342.0 266 67.7
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 2.0e-91 339.7 269 66.2
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.7e-87 326.6 266 66.9
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.0e-87 325.9 267 65.9
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.7e-85 318.5 267 64.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.6e-83 312.8 247 65.2
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.2e-75 287.3 220 63.6
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 4.9e-74 282.0 220 64.1
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.1e-72 276.6 263 56.3
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 3.5e-72 275.8 274 53.6
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.0e-72 275.0 252 55.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 2.3e-71 273.1 250 58.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.0e-71 272.7 224 60.3
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.9e-70 270.0 264 56.1
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.9e-70 270.0 223 62.8
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 3.3e-70 269.2 264 56.8
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 4.3e-70 268.9 264 55.7
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 7.3e-70 268.1 219 61.6
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.2e-69 267.3 216 63.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 1.2e-69 267.3 264 55.3
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.6e-69 266.9 219 61.2
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 2.1e-69 266.5 239 59.0
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 2.1e-69 266.5 264 54.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.8e-69 266.2 221 61.1
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.6e-69 265.8 219 61.2
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 4.7e-69 265.4 266 54.5
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 6.2e-69 265.0 270 53.7
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 6.2e-69 265.0 235 58.7
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.4e-68 263.8 229 59.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.8e-68 263.5 268 51.1
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.8e-68 263.5 268 51.1
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.1e-68 262.7 219 60.3
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 5.2e-68 261.9 262 51.9
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 6.9e-68 261.5 254 54.7
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 6.9e-68 261.5 265 52.8
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.6e-67 259.6 218 59.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.4e-67 259.2 270 54.8
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 4.4e-67 258.8 228 58.8
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.8e-67 258.5 261 54.0
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 9.9e-67 257.7 223 58.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.3e-66 257.3 232 57.3
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.3e-66 257.3 269 52.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.2e-66 256.5 215 58.6
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.4e-66 255.0 215 58.1
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.9e-65 253.4 223 56.1
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 2.4e-65 253.1 217 59.4
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 7.1e-65 251.5 216 59.3
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 7.1e-65 251.5 234 54.3
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 2.1e-64 250.0 221 57.9
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.7e-64 249.6 220 55.9
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 3.5e-64 249.2 221 57.5
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 4.6e-64 248.8 249 51.4
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.6e-64 248.8 222 55.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.0e-63 247.7 221 57.9
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.3e-63 247.3 233 53.2
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.3e-63 247.3 233 53.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.0e-63 246.1 220 55.0
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 3.0e-63 246.1 267 49.1
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.1e-63 245.4 226 54.9
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 8.7e-63 244.6 216 56.0
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 8.7e-63 244.6 221 56.6
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.1e-62 244.2 220 54.5
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.9e-62 243.4 262 50.0
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.5e-62 243.0 261 51.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.5e-62 243.0 261 51.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 3.3e-62 242.7 265 47.9
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 7.3e-62 241.5 221 53.8
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 7.3e-62 241.5 263 48.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.3e-62 241.5 235 51.1
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.6e-61 240.4 220 55.0
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.8e-61 239.6 269 50.6
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 4.8e-61 238.8 221 55.7
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.2e-61 238.4 270 51.1
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.0e-60 235.7 270 50.0
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.6e-59 233.0 219 53.0
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 7.6e-59 231.5 194 60.3
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 9.9e-59 231.1 233 54.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.9e-59 231.1 199 56.3
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.2e-58 229.9 264 47.3
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.9e-58 228.8 193 58.5
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 4.2e-57 225.7 184 67.9
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.1e-56 223.4 219 54.8
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.3e-55 220.7 186 60.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.0e-55 219.5 227 53.7
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.5e-54 216.5 213 54.0
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 3.3e-54 216.1 231 52.4
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 5.6e-54 215.3 186 59.1
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.6e-53 213.8 287 43.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 2.1e-53 213.4 243 51.4
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 3.7e-53 212.6 232 49.1
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.1e-52 211.1 174 60.9
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 4.0e-52 209.1 160 63.8
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.4e-51 206.1 235 47.2
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-50 203.4 185 55.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.2e-50 203.4 232 46.1
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-48 197.6 180 55.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.5e-48 196.1 211 50.2
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 5.1e-47 192.2 220 47.7
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-46 191.0 188 53.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-42 176.4 184 52.7
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-31 139.8 132 52.3
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.8e-29 133.3 124 52.4
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 6.3e-29 132.1 105 61.9
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.1e-28 129.4 115 53.9
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.3e-28 129.0 168 44.6
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-26 123.2 110 55.5
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 8.5e-26 121.7 110 56.4
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-25 121.3 188 41.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.1e-24 117.1 205 33.2
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.4e-22 108.6 103 53.4
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.8e-20 104.0 86 61.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-20 102.1 70 65.7
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-19 99.8 121 48.8
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.2e-17 92.8 83 56.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 3.9e-15 86.3 91 48.4
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 5.2e-15 85.9 82 46.3
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 8.8e-15 85.1 95 47.4
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-14 84.3 99 49.5
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.1e-12 78.2 55 61.8
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.4e-12 77.8 61 60.7
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-12 77.0 88 48.9
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.5e-11 72.8 104 41.3
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.7e-10 70.9 64 53.1
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-09 67.4 68 50.0
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.7e-08 63.5 158 29.1
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-06 58.2 42 59.5
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.4e-06 56.2 71 40.8
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 5.7e-06 55.8 46 47.8
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 7.5e-06 55.5 38 63.2


User provided reference genes

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