Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9WLS7Z Arachis hypogaea HOM05D003065 ORTHO05D003802 2.2e-271 938.3 475 100.0
arahy.Tifrunner.gnm1.ann1.AR4R13 Arachis hypogaea HOM05D003065 ORTHO05D003802 2.2e-271 938.3 475 100.0
Cc05_g05030 Coffea canephora HOM05D003065 ORTHO05D003802 1.5e-33 148.3 261 38.7
BraA09t42082Z Brassica rapa HOM05D003065 ORTHO05D003802 1.7e-32 144.8 689 24.8
Lalb_Chr03g0028881 Lupinus albus HOM05D003065 ORTHO05D003802 1.7e-32 144.8 294 37.4
Lalb_Chr01g0005571 Lupinus albus HOM05D003065 ORTHO05D003802 2.2e-32 144.4 311 34.7
ClCG02G008460 Citrullus lanatus HOM05D003065 ORTHO05D003802 3.7e-32 143.7 252 37.3
Manes.13G072700 Manihot esculenta HOM05D003065 ORTHO05D003802 4.9e-32 143.3 308 35.7
SalBow1G7597 Salvia bowleyana HOM05D003065 ORTHO05D003802 8.3e-32 142.5 267 36.3
Cpa.g.sc8.233 Carica papaya HOM05D003065 ORTHO05D003802 1.1e-31 142.1 261 40.6
PGR142G3240 Punica granatum HOM05D003065 ORTHO05D003802 1.8e-31 141.4 310 35.8
COL.COLO4_12981 Corchorus olitorius HOM05D003065 ORTHO05D003802 4.1e-31 140.2 307 35.8
Lj3g0014705 Lotus japonicus HOM05D003065 ORTHO05D003802 5.4e-31 139.8 293 36.2
PSO541G1708 Papaver somniferum HOM05D003065 ORTHO05D003802 5.4e-31 139.8 293 38.2
VMungo1127G1760 Vigna mungo HOM05D003065 ORTHO05D003802 5.4e-31 139.8 295 36.9
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 7.0e-31 139.4 265 37.7
Aa31LG1G19430 Aethionema arabicum HOM05D003065 ORTHO05D003802 9.2e-31 139.0 310 35.2
arahy.Tifrunner.gnm1.ann1.Y3QZTF Arachis hypogaea HOM05D003065 ORTHO05D003802 1.2e-30 138.7 284 37.3
Dinv18529 Davidia involucrata HOM05D003065 ORTHO05D003802 1.2e-30 138.7 290 35.5
Duzib248G1274 Durio zibethinus HOM05D003065 ORTHO05D003802 1.2e-30 138.7 292 35.6
PSO675G8127 Papaver somniferum HOM05D003065 ORTHO05D003802 1.2e-30 138.7 293 38.2
Nn1g07002 Nelumbo nucifera HOM05D003065 ORTHO05D003802 1.6e-30 138.3 289 34.6
CARHR004740 Cardamine hirsuta HOM05D003065 ORTHO05D003802 2.7e-30 137.5 302 34.8
Thecc.02G162000 Theobroma cacao HOM05D003065 ORTHO05D003802 4.5e-30 136.7 315 34.9
BcaC07g42139 Brassica carinata HOM05D003065 ORTHO05D003802 5.9e-30 136.3 293 34.8
Glyma.12G101300 Glycine max HOM05D003065 ORTHO05D003802 7.8e-30 136.0 285 36.1
Phvul.011G106000 Phaseolus vulgaris HOM05D003065 ORTHO05D003802 7.8e-30 136.0 294 36.1
PGSC0003DMG400024333 Solanum tuberosum HOM05D003065 ORTHO05D003802 7.8e-30 136.0 250 39.6
TWI36G1576 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 1.0e-29 135.6 286 35.7
Gohir.A13G059500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 1.3e-29 135.2 307 34.2
Gohir.D13G062500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 1.3e-29 135.2 307 34.2
Gorai.013G071000 Gossypium raimondii HOM05D003065 ORTHO05D003802 1.3e-29 135.2 307 34.2
ECA233G0914 Erigeron canadensis HOM05D003065 ORTHO05D003802 1.7e-29 134.8 281 36.7
BraA08t35551Z Brassica rapa HOM05D003065 ORTHO05D003802 2.3e-29 134.4 294 35.0
Cfa014437 Carpinus fangiana HOM05D003065 ORTHO05D003802 2.3e-29 134.4 291 36.1
HanXRQChr17g0560931 Helianthus annuus HOM05D003065 ORTHO05D003802 2.3e-29 134.4 312 33.7
Ca_19100_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 2.9e-29 134.0 287 36.2
Lsat_1_v5_gn_8_129420 Lactuca sativa HOM05D003065 ORTHO05D003802 2.9e-29 134.0 284 36.6
Psat7g195560 Pisum sativum HOM05D003065 ORTHO05D003802 2.9e-29 134.0 294 36.7
Sed0000552 Sechium edule HOM05D003065 ORTHO05D003802 2.9e-29 134.0 291 35.4
BcaC07g36852 Brassica carinata HOM05D003065 ORTHO05D003802 3.8e-29 133.7 300 34.0
CiPaw.04G117500 Carya illinoinensis HOM05D003065 ORTHO05D003802 3.8e-29 133.7 294 34.7
Os05g0499500 Oryza sativa ssp. japonica HOM05D003065 ORTHO05D003802 3.8e-29 133.7 319 33.9
MELO3C019237.2 Cucumis melo HOM05D003065 ORTHO05D003802 5.0e-29 133.3 291 35.1
Solyc12g005780.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 5.0e-29 133.3 294 35.4
Sopen12g001710 Solanum pennellii HOM05D003065 ORTHO05D003802 5.0e-29 133.3 294 35.4
Atru.chr6.3154 Acer truncatum HOM05D003065 ORTHO05D003802 8.6e-29 132.5 288 36.1
AT1G05270 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 8.6e-29 132.5 297 34.7
FvH4_6g43520 Fragaria vesca HOM05D003065 ORTHO05D003802 8.6e-29 132.5 298 34.6
Lj8A123T53 Lonicera japonica HOM05D003065 ORTHO05D003802 8.6e-29 132.5 267 36.0
TWI75G1157 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 8.6e-29 132.5 286 35.7
unitig_21.g20057 Utricularia gibba HOM05D003065 ORTHO05D003802 8.6e-29 132.5 300 33.3
GSVIVG01030621001 Vitis vinifera HOM05D003065 ORTHO05D003802 8.6e-29 132.5 317 33.4
Ciclev10015457m.g Citrus clementina HOM05D003065 ORTHO05D003802 1.5e-28 131.7 302 35.4
Medtr4g046707 Medicago truncatula HOM05D003065 ORTHO05D003802 1.5e-28 131.7 295 35.6
Nitab4.5_0001176g0140 Nicotiana tabacum HOM05D003065 ORTHO05D003802 1.5e-28 131.7 277 36.8
EL10Ac9g20661 Beta vulgaris HOM05D003065 ORTHO05D003802 1.9e-28 131.3 287 35.9
C08p51790 Brassica napus HOM05D000310 ORTHO05D003802 1.9e-28 131.3 573 25.5
DCAR_012955 Daucus carota HOM05D003065 ORTHO05D003802 1.9e-28 131.3 309 34.3
FAN09G1506 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.9e-28 131.3 292 36.0
Sabra07G0098600 Salix brachista HOM05D003065 ORTHO05D003802 1.9e-28 131.3 293 34.8
MSTRG.12287 Avicennia marina HOM05D003065 ORTHO05D003802 2.5e-28 131.0 287 33.8
Ca_19102_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 3.3e-28 130.6 348 33.0
FAN14G1636 Fragaria x ananassa HOM05D003065 ORTHO05D003802 3.3e-28 130.6 292 34.9
Nitab4.5_0005894g0020 Nicotiana tabacum HOM05D003065 ORTHO05D003802 3.3e-28 130.6 277 36.8
Zm00001eb291870 Zea mays HOM05D003065 ORTHO05D003802 3.3e-28 130.6 290 35.5
AL1G15050 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 4.3e-28 130.2 292 34.6
CANSAT64G1715 Cannabis sativa HOM05D003065 ORTHO05D003802 4.3e-28 130.2 284 34.5
Nn1g03660 Nelumbo nucifera HOM05D003065 ORTHO05D003802 4.3e-28 130.2 313 33.2
A09p67510 Brassica napus HOM05D000226 ORTHO05D000142 5.6e-28 129.8 247 39.3
Potri.007G121900 Populus trichocarpa HOM05D003065 ORTHO05D003802 5.6e-28 129.8 293 34.8
AT2G32340 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 7.3e-28 129.4 283 32.5
BcaC05g24399 Brassica carinata HOM05D003065 ORTHO05D003802 7.3e-28 129.4 258 34.5
Carub.0001s0456 Capsella rubella HOM05D003065 ORTHO05D003802 9.5e-28 129.0 300 35.3
CsaV3_2G035170 Cucumis sativus L. HOM05D003065 ORTHO05D003802 9.5e-28 129.0 287 33.8
Thhalv10007929m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 9.5e-28 129.0 291 32.3
FAN02G0663 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.2e-27 128.6 292 34.6
Potri.017G038500 Populus trichocarpa HOM05D003065 ORTHO05D003802 1.2e-27 128.6 293 34.8
TPR.G19036 Trifolium pratense HOM05D003065 ORTHO05D003802 1.2e-27 128.6 283 35.0
MSTRG.14153 Avicennia marina HOM05D003065 ORTHO05D003802 1.6e-27 128.3 296 35.5
Hma1.2p1_0613F.1_g189150 Hydrangea macrophylla HOM05D003065 ORTHO05D003802 1.6e-27 128.3 280 33.6
CDE05G1053 Ceratophyllum demersum HOM05D003065 ORTHO05D003802 2.1e-27 127.9 295 36.3
Prupe.3G220000 Prunus persica HOM05D003065 ORTHO05D003802 2.1e-27 127.9 304 33.6
Sabra17G0025600 Salix brachista HOM05D003065 ORTHO05D003802 2.1e-27 127.9 274 35.0
Aqoxy4G02067 Aquilegia oxysepala HOM05D003065 ORTHO05D003802 2.8e-27 127.5 286 34.6
AL4G27732 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 2.8e-27 127.5 236 37.3
A08p36480 Brassica napus HOM05D003065 ORTHO05D003802 3.6e-27 127.1 307 33.6
C08p01860 Brassica napus HOM05D003065 ORTHO05D003802 3.6e-27 127.1 307 33.6
BolC8t46984H Brassica oleracea HOM05D003065 ORTHO05D003802 3.6e-27 127.1 307 33.6
MD09G1105400 Malus domestica HOM05D003065 ORTHO05D003802 3.6e-27 127.1 294 34.7
BolC8t52711H Brassica oleracea HOM05D003065 ORTHO05D003802 4.7e-27 126.7 320 32.2
Thhalv10017883m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 4.7e-27 126.7 292 33.2
MD17G1093000 Malus domestica HOM05D003065 ORTHO05D003802 6.1e-27 126.3 323 34.1
Migut.H01221 Erythranthe guttata HOM05D003065 ORTHO05D003802 1.4e-26 125.2 277 34.3
Sp1g04125 Schrenkiella parvula HOM05D003065 ORTHO05D003802 1.4e-26 125.2 281 32.4
CiPaw.03G162600 Carya illinoinensis HOM05D003065 ORTHO05D003802 1.8e-26 124.8 297 33.3
RcHm_v2.0_Chr2g0160041 Rosa chinensis HOM05D003065 ORTHO05D003802 1.8e-26 124.8 285 34.7
THA.LOC104827382 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 3.0e-26 124.0 283 34.3
Haze_12895 Corylus avellana HOM05D003065 ORTHO05D003802 4.0e-26 123.6 261 37.5
Nitab4.5_0000631g0050 Nicotiana tabacum HOM05D003065 ORTHO05D003802 4.0e-26 123.6 307 30.3
Sc12g0002370 Simmondsia chinensis HOM05D003065 ORTHO05D003802 5.2e-26 123.2 286 32.9
Peaxi162Scf00007g01221 Petunia axillaris HOM05D003065 ORTHO05D003802 6.8e-26 122.9 277 35.7
BraA10t42653Z Brassica rapa HOM05D003065 ORTHO05D003802 8.9e-26 122.5 272 33.5
THA.LOC104800983 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 1.2e-25 122.1 295 33.9
VMungo1127G1794 Vigna mungo HOM05D003065 ORTHO05D003802 1.2e-25 122.1 337 31.8
AL125U10034 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 1.5e-25 121.7 234 35.5
Nitab4.5_0006207g0040 Nicotiana tabacum HOM05D003065 ORTHO05D003802 1.5e-25 121.7 182 41.8
BolC5t29129H Brassica oleracea HOM05D003065 ORTHO05D003802 4.4e-25 120.2 273 32.6
CAN.G80.21 Capsicum annuum HOM05D003065 ORTHO05D003802 5.8e-25 119.8 182 40.1
Sp4g14710 Schrenkiella parvula HOM05D003065 ORTHO05D003802 9.8e-25 119.0 295 31.2
A03p18140 Brassica napus HOM05D003065 ORTHO05D003802 1.7e-24 118.2 278 32.7
AUR62025067 Chenopodium quinoa HOM05D003065 ORTHO05D003802 1.7e-24 118.2 287 32.1
Potri.007G121800 Populus trichocarpa HOM05D003065 ORTHO05D003802 2.2e-24 117.9 274 33.2
QL08p033752 Quercus lobata HOM05D003065 ORTHO05D003802 3.7e-24 117.1 186 43.0
BolC8t52712H Brassica oleracea HOM05D003065 ORTHO05D003802 4.9e-24 116.7 252 34.5
Carub.0004s1369 Capsella rubella HOM05D003065 ORTHO05D003802 4.9e-24 116.7 296 33.4
Ah.01g014620 Amaranthus hybridus HOM05D003065 ORTHO05D003802 8.3e-24 115.9 227 37.9
C04p17290 Brassica napus HOM05D003065 ORTHO05D003802 5.4e-23 113.2 278 31.7
BolC4t23281H Brassica oleracea HOM05D003065 ORTHO05D003802 5.4e-23 113.2 278 31.7
BcaC02g11329 Brassica carinata HOM05D003065 ORTHO05D003802 7.0e-23 112.8 284 31.7
A05p13140 Brassica napus HOM05D003065 ORTHO05D003802 7.0e-23 112.8 278 31.7
BraA05t20252Z Brassica rapa HOM05D003065 ORTHO05D003802 7.0e-23 112.8 278 31.7
Solyc07g052560.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 9.2e-23 112.5 170 42.4
BraA03t11073Z Brassica rapa HOM05D003065 ORTHO05D003802 1.2e-22 112.1 292 31.8
Pp3c16_8270 Physcomitrium patens HOM05D003065 ORTHO05D003802 1.2e-22 112.1 280 32.5
Thhalv10017846m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 2.0e-22 111.3 184 41.3
MD17G1092800 Malus domestica HOM05D003065 ORTHO05D003802 2.0e-22 111.3 236 34.3
Ca_28271_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 3.5e-22 110.5 182 37.9
BcaB01g03983 Brassica carinata HOM05D003065 ORTHO05D003802 7.8e-22 109.4 288 31.2
BcaC01g05909 Brassica carinata HOM05D003065 ORTHO05D003802 7.8e-22 109.4 288 31.2
C03p21170 Brassica napus HOM05D003065 ORTHO05D003802 7.8e-22 109.4 288 31.2
MBI02_g34314_MAGBIO Magnolia biondii HOM05D003065 ORTHO05D003802 7.8e-22 109.4 293 31.1
Sabra07G0098500 Salix brachista HOM05D003065 ORTHO05D003802 1.0e-21 109.0 237 34.6
BcaB02g10475 Brassica carinata HOM05D003065 ORTHO05D003802 1.3e-21 108.6 298 30.5
TWI36G0602 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 1.3e-21 108.6 187 36.4
PGSC0003DMG400026175 Solanum tuberosum HOM05D003065 ORTHO05D003802 1.7e-21 108.2 274 31.8
FAN09G0800 Fragaria x ananassa HOM05D003065 ORTHO05D003802 2.3e-21 107.8 287 31.7
Lj3g0025078 Lotus japonicus HOM05D003065 ORTHO05D003802 2.3e-21 107.8 247 32.0
PGR142G1323 Punica granatum HOM05D003065 ORTHO05D003802 3.0e-21 107.5 288 30.6
CARHR126160 Cardamine hirsuta HOM05D003065 ORTHO05D003802 1.5e-20 105.1 167 40.7
CSS0049428 Camellia sinensis var. sinensis HOM05D003065 ORTHO05D003802 2.5e-20 104.4 258 32.6
Thhalv10002878m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 5.6e-20 103.2 287 30.7
SalBow1G5165 Salvia bowleyana HOM05D003065 ORTHO05D003802 3.1e-18 97.4 275 28.7
vmacro09325 Vaccinium macrocarpon HOM05D003065 ORTHO05D003802 5.2e-18 96.7 210 36.2
Medtr6g055230 Medicago truncatula HOM05D003065 ORTHO05D003802 6.8e-18 96.3 301 29.9
SalBow1G4454 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.2e-17 95.5 270 29.6
Peaxi162Scf00012g00336 Petunia axillaris HOM05D003065 ORTHO05D003802 2.6e-17 94.4 288 30.9
BolC3t14500H Brassica oleracea HOM05D003065 ORTHO05D003802 3.4e-17 94.0 262 30.2
SalBow1G5817 Salvia bowleyana HOM05D003065 ORTHO05D003802 7.5e-17 92.8 275 26.2
AUR62037144 Chenopodium quinoa HOM05D003065 ORTHO05D003802 1.7e-16 91.7 181 33.1
SalBow3G4408 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.2e-16 91.3 273 27.1
CBR_g51235 Chara braunii HOM05D003065 ORTHO05D003802 3.7e-16 90.5 185 35.7
SalBow1G5448 Salvia bowleyana HOM05D003065 ORTHO05D003802 4.9e-16 90.1 230 29.6
VMungo1127G1692 Vigna mungo HOM05D003065 ORTHO05D003802 4.9e-16 90.1 253 34.4
SalBow1G0983 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.9e-15 88.2 273 27.5
CAN.G921.9 Capsicum annuum HOM05D003065 ORTHO05D003802 2.4e-15 87.8 189 36.0
SalBow3G2088 Salvia bowleyana HOM05D003065 ORTHO05D003802 7.0e-15 86.3 275 26.2
Glyma.U031313 Glycine max HOM05D003065 ORTHO05D003802 2.7e-14 84.3 76 55.3
Aa31LG8G5800 Aethionema arabicum HOM05D003065 ORTHO05D003802 6.0e-14 83.2 176 38.6
Aa31LG8G5790 Aethionema arabicum HOM05D003065 ORTHO05D003802 7.8e-14 82.8 181 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4125 Anthoceros agrestis HOM05D003065 ORTHO05D003802 5.1e-13 80.1 257 26.1
SalBow1G8297 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.5e-12 77.8 166 33.7
SpUn0024_0010 Schrenkiella parvula HOM05D003065 ORTHO05D003802 5.6e-12 76.6 104 38.5
Lj3g0026585 Lotus japonicus HOM05D003065 ORTHO05D003802 7.3e-12 76.3 155 39.4
SEGI_25045 Sequoiadendron giganteum HOM05D003065 ORTHO05D003802 9.5e-12 75.9 81 48.1
BcaB01g03984 Brassica carinata HOM05D003065 ORTHO05D003802 1.2e-11 75.5 87 46.0
BcaC05g24396 Brassica carinata HOM05D003065 ORTHO05D003802 1.2e-11 75.5 75 45.3
C05p03480 Brassica napus HOM05D003065 ORTHO05D003802 6.2e-11 73.2 121 40.5
TAR626G0646 Trochodendron aralioides HOM05D003065 ORTHO05D003802 1.1e-10 72.4 173 34.1
Medtr4g046663 Medicago truncatula HOM05D003065 ORTHO05D003802 3.1e-10 70.9 82 42.7
A10p03780 Brassica napus HOM05D003065 ORTHO05D003802 8.9e-10 69.3 121 39.7
SalBow1G0142 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.5e-09 68.6 189 31.7
ATR0794G140 Amborella trichopoda HOM05D003065 ORTHO05D003802 2.0e-09 68.2 258 28.7
SMO329G0098 Selaginella moellendorffii HOM05D003065 ORTHO05D003802 2.6e-09 67.8 210 28.1
Lj3g0000029 Lotus japonicus HOM05D003065 ORTHO05D003802 3.4e-09 67.4 57 59.6
arahy.Tifrunner.gnm1.ann1.KAFC7Q Arachis hypogaea HOM05D003065 ORTHO05D003802 9.9e-09 65.9 65 52.3
SMO329G0091 Selaginella moellendorffii HOM05D003065 ORTHO05D003802 9.9e-09 65.9 184 31.0
Actinidia30511 Actinidia chinensis HOM05D003065 ORTHO05D003802 1.3e-08 65.5 146 33.6
TPR.G19041 Trifolium pratense HOM05D003065 ORTHO05D003802 2.9e-08 64.3 217 29.0
TPR.G39901 Trifolium pratense HOM05D003065 ORTHO05D003802 1.1e-07 62.4 50 52.0
SMO238G0005 Selaginella moellendorffii HOM05D003065 ORTHO05D003802 5.4e-07 60.1 162 29.0
Eucgr.K00810 Eucalyptus grandis HOM05D003065 ORTHO05D003802 9.2e-07 59.3 121 39.7
C09p44370 Brassica napus HOM05D003065 ORTHO05D003802 2.1e-06 58.2 50 50.0
FAN05G4232 Fragaria x ananassa HOM05D003065 ORTHO05D003802 7.8e-06 56.2 142 31.7


User provided reference genes

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