Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-84 315.1 154 100.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.8e-27 124.8 105 65.7
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.3e-26 123.6 98 64.3
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 2.2e-26 122.9 104 64.4
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.8e-26 122.1 129 56.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 6.4e-26 121.3 104 62.5
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-25 119.0 58 93.1
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.1e-25 117.9 107 62.6
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.5e-22 110.2 117 54.7
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.3e-21 107.1 130 53.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-21 105.9 121 54.5
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-21 105.9 121 54.5
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.2e-21 104.8 125 54.4
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.8e-20 103.2 102 55.9
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.1e-20 102.4 123 52.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 3.1e-20 102.4 102 54.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 4.0e-20 102.1 102 56.9
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 5.3e-20 101.7 104 58.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 5.3e-20 101.7 102 57.8
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 9.0e-20 100.9 102 57.8
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 9.0e-20 100.9 123 52.8
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 9.0e-20 100.9 102 55.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-19 100.1 102 55.9
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-19 100.1 102 55.9
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.5e-19 100.1 104 57.7
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.5e-19 100.1 123 52.8
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.5e-19 100.1 104 57.7
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.5e-19 100.1 104 57.7
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.0e-19 99.8 104 56.7
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 52.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 50.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 50.4
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 50.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 52.0
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 52.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.6e-19 99.4 123 51.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.6e-19 99.4 152 45.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 3.4e-19 99.0 104 56.7
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.4e-19 99.0 123 52.0
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.4e-19 99.0 123 52.0
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.4e-19 99.0 123 52.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.4e-19 99.0 123 52.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.4e-19 99.0 123 50.4
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.4e-19 98.6 123 52.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.4e-19 98.6 104 56.7
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.4e-19 98.6 116 49.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 4.4e-19 98.6 123 52.0
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 4.4e-19 98.6 104 56.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 4.4e-19 98.6 102 55.9
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 4.4e-19 98.6 104 56.7
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 4.4e-19 98.6 145 45.5
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 4.4e-19 98.6 123 51.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.4e-19 98.6 104 56.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.4e-19 98.6 104 56.7
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.4e-19 98.6 104 56.7
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 5.8e-19 98.2 123 52.0
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 5.8e-19 98.2 123 49.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 5.8e-19 98.2 104 56.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 5.8e-19 98.2 104 56.7
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 5.8e-19 98.2 104 55.8
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 5.8e-19 98.2 123 51.2
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 5.8e-19 98.2 104 56.7
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 7.6e-19 97.8 123 52.0
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 7.6e-19 97.8 102 54.9
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 7.6e-19 97.8 123 51.2
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 7.6e-19 97.8 104 55.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 7.6e-19 97.8 123 51.2
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 9.9e-19 97.4 123 51.2
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 9.9e-19 97.4 102 55.9
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 9.9e-19 97.4 104 53.8
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.3e-18 97.1 102 55.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.3e-18 97.1 104 55.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.3e-18 97.1 123 49.6
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.3e-18 97.1 147 46.3
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.7e-18 96.7 104 55.8
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.2e-18 96.3 123 50.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.2e-18 96.3 147 46.3
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.2e-18 96.3 130 47.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.2e-18 96.3 123 49.6
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.2e-18 96.3 123 50.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.2e-18 96.3 123 50.4
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.2e-18 96.3 80 62.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.9e-18 95.9 168 42.9
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.9e-18 95.9 123 50.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.9e-18 95.9 102 53.9
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.9e-18 95.9 123 49.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.9e-18 95.9 102 53.9
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.8e-18 95.5 104 54.8
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.8e-18 95.5 102 54.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.8e-18 95.5 102 54.9
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.8e-18 95.5 123 50.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 6.4e-18 94.7 123 50.4
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 8.4e-18 94.4 121 49.6
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 8.4e-18 94.4 80 65.0
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 8.4e-18 94.4 123 49.6
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.1e-17 94.0 123 48.8
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.4e-17 93.6 102 55.9
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.4e-17 92.8 121 48.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.4e-17 92.8 104 53.8
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.2e-17 92.0 153 41.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 4.2e-17 92.0 123 49.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.1e-17 91.3 147 44.9
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 3.5e-16 89.0 104 51.0
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.9e-16 87.8 147 42.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-15 87.4 143 42.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.7e-15 86.7 113 50.4
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 3.0e-15 85.9 104 46.2
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.9e-15 85.5 150 41.3
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 6.6e-15 84.7 89 51.7
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.1e-14 84.0 44 88.6
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.5e-14 82.8 164 37.8
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 3.3e-14 82.4 158 39.2
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.3e-14 82.4 46 84.8
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 7.3e-14 81.3 123 42.3
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 9.6e-14 80.9 46 78.3
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.3e-13 80.5 42 83.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.6e-13 80.1 46 82.6
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.1e-13 79.7 45 82.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.1e-13 79.7 45 82.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 5.3e-12 75.1 104 45.2
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.9e-12 74.7 116 40.5
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 9.9e-11 70.9 125 42.4
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.6e-08 63.5 109 42.2
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.9e-08 61.2 135 33.3
Ca_06100_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 4.3e-06 55.5 65 47.7
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 5.6e-06 55.1 78 42.3


User provided reference genes

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