Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 4.1e-122 441.4 224 100.0
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 2.6e-121 438.7 224 99.6
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 5.0e-112 407.9 223 91.9
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 6.5e-112 407.5 222 92.3
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.9e-111 406.0 222 90.5
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.2e-111 405.2 221 92.3
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.5e-108 396.4 222 89.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.0e-108 396.0 219 90.9
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 2.0e-105 386.0 217 87.6
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 6.5e-104 380.9 217 87.1
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 6.5e-104 380.9 217 85.7
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 9.8e-100 367.1 221 82.4
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.3e-99 366.7 217 82.0
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 4.8e-99 364.8 219 80.8
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.1e-98 363.6 224 80.8
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.4e-98 362.5 218 81.7
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.1e-98 361.7 222 81.5
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.2e-97 360.1 221 80.5
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.2e-97 360.1 221 80.5
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.6e-97 359.8 221 81.4
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.0e-97 359.4 216 82.9
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.7e-97 359.0 217 82.9
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 5.9e-97 357.8 220 81.4
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 5.9e-97 357.8 220 79.1
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 7.7e-97 357.5 223 78.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 2.9e-96 355.5 216 81.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 3.8e-96 355.1 220 78.6
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.8e-96 355.1 219 79.9
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 6.5e-96 354.4 221 79.2
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 6.5e-96 354.4 223 79.4
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 6.5e-96 354.4 221 78.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.5e-95 353.2 224 80.4
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.5e-95 353.2 217 79.3
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.5e-95 353.2 219 81.7
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.5e-95 352.4 223 78.5
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 4.2e-95 351.7 223 78.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 7.2e-95 350.9 223 77.6
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 7.2e-95 350.9 220 78.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 9.4e-95 350.5 223 77.6
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.2e-94 350.1 215 79.5
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.6e-94 349.7 221 77.4
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.7e-94 349.0 223 77.1
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.1e-94 347.8 217 79.7
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.4e-93 346.7 258 68.6
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.4e-93 346.7 221 77.4
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.3e-93 345.9 215 79.1
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.0e-93 345.5 217 77.9
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 3.0e-93 345.5 218 77.5
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 4.0e-93 345.1 223 77.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 4.0e-93 345.1 218 77.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 4.0e-93 345.1 218 77.5
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 5.2e-93 344.7 219 77.2
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 8.8e-93 344.0 217 77.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.2e-92 343.6 217 77.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.2e-92 343.6 218 77.5
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.2e-92 343.6 215 78.1
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.5e-92 343.2 217 77.0
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.5e-92 343.2 217 77.0
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.6e-92 342.4 217 78.8
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-92 342.0 217 76.5
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.4e-92 342.0 217 76.5
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 4.4e-92 341.7 217 76.5
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 4.4e-92 341.7 234 73.9
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 5.7e-92 341.3 214 79.0
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 7.5e-92 340.9 214 78.5
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 7.5e-92 340.9 215 79.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.7e-91 339.7 217 78.3
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.7e-91 339.7 215 76.7
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.8e-91 339.0 217 77.0
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 3.7e-91 338.6 216 75.9
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.9e-91 338.2 217 76.0
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 8.3e-91 337.4 216 75.5
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.4e-90 335.9 212 75.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.1e-90 335.5 217 76.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 4.1e-90 335.1 210 76.2
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.1e-90 335.1 221 74.7
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 5.4e-90 334.7 212 76.4
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.3e-88 330.1 218 74.3
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.3e-88 329.3 227 72.7
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 2.3e-88 329.3 226 72.1
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.9e-88 328.9 218 73.4
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 3.8e-88 328.6 210 76.2
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.8e-88 328.6 213 76.5
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.5e-87 326.6 226 71.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.6e-86 323.2 219 73.1
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.6e-86 323.2 222 72.1
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.0e-85 320.5 215 73.0
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.4e-85 320.1 265 63.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-85 319.7 210 75.7
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 5.2e-85 318.2 217 72.8
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 5.2e-85 318.2 217 72.8
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 8.9e-85 317.4 261 62.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.0e-84 316.2 215 71.6
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.6e-84 315.8 217 72.4
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.4e-84 315.5 217 70.5
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.4e-84 315.5 221 73.8
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 4.4e-84 315.1 215 71.2
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 4.4e-84 315.1 215 71.2
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 9.8e-84 313.9 215 70.7
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-83 313.2 215 70.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.9e-83 312.4 218 68.3
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.4e-82 310.1 215 69.3
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 2.0e-81 306.2 189 79.4
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 4.6e-81 305.1 221 71.0
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 3.0e-80 302.4 213 68.5
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 5.0e-80 301.6 221 68.8
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.5e-79 300.1 217 68.7
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.1e-78 296.2 213 69.5
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.0e-77 292.0 217 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 8.9e-77 290.8 214 65.4
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.5e-76 290.0 212 66.5
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.3e-75 287.0 219 67.1
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.3e-75 287.0 216 67.6
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.0e-72 277.3 180 73.3
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.9e-71 273.1 183 73.2
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.3e-63 245.7 215 60.0
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.4e-60 235.7 141 82.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.6e-56 221.5 130 83.8
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.3e-55 219.2 231 50.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.8e-54 216.1 125 80.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.5e-52 210.3 124 83.1
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 9.9e-52 207.6 124 80.6
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 3.2e-50 202.6 125 78.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.2e-43 179.9 155 60.0
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.4e-42 175.3 124 67.7
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.5e-39 167.2 117 70.1
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.5e-39 166.4 131 67.9
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.9e-35 152.9 102 71.6
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.3e-34 147.9 91 78.0
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 5.1e-32 142.1 92 77.2
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.7e-32 141.7 95 71.6
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.5e-31 140.6 95 72.6
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.1e-29 134.4 164 43.9
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.1e-29 132.9 202 39.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.4e-28 129.4 192 38.5
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.7e-27 127.1 77 79.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.9e-27 126.3 218 35.3
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 3.2e-26 122.9 203 37.4
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 4.6e-25 119.0 103 62.1
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 6.0e-25 118.6 202 39.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.5e-23 114.0 219 33.3
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 8.2e-22 108.2 195 37.4
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.5e-20 104.0 70 70.0
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.5e-20 104.0 65 78.5
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-20 103.6 74 68.9
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.6e-20 103.2 171 37.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.4e-20 102.8 194 36.6
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.7e-19 100.5 81 65.4
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 8.5e-19 98.2 215 32.1
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.5e-18 96.7 66 69.7
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.2e-18 95.1 63 69.8
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.7e-17 93.2 88 55.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.0e-16 91.3 63 73.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.1e-15 87.8 69 65.2
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 3.3e-15 86.3 53 79.2
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 5.7e-15 85.5 51 76.5
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 3.7e-14 82.8 59 69.5
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 4.8e-14 82.4 50 80.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 4.8e-14 82.4 68 58.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 4.2e-10 69.3 66 54.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 1.6e-09 67.4 68 51.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 2.7e-09 66.6 65 52.3
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 3.6e-09 66.2 64 53.1
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 4.6e-09 65.9 57 63.2
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 7.9e-09 65.1 57 61.4
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 7.9e-09 65.1 39 79.5
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 7.9e-09 65.1 59 55.9
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.7e-06 57.4 79 41.8


User provided reference genes

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