Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9UVD5Q Arachis hypogaea HOM05D005340 ORTHO05D006693 2.3e-162 575.5 282 100.0
arahy.Tifrunner.gnm1.ann1.HD0QD7 Arachis hypogaea HOM05D005340 ORTHO05D006693 1.1e-100 370.5 374 58.0
arahy.Tifrunner.gnm1.ann1.2X25WT Arachis hypogaea HOM05D005340 ORTHO05D006693 8.2e-96 354.4 369 56.4
Glyma.13G046500 Glycine max HOM05D005340 ORTHO05D006693 3.5e-86 322.4 369 51.5
Lj2g0006310 Lotus japonicus HOM05D005340 ORTHO05D006693 6.5e-85 318.2 377 49.6
Phvul.002G243400 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 8.5e-85 317.8 377 49.1
VMungo1127G2281 Vigna mungo HOM05D005340 ORTHO05D006693 3.2e-84 315.8 376 49.2
Phvul.004G064500 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 1.2e-83 313.9 376 49.7
Lalb_Chr06g0174621 Lupinus albus HOM05D005340 ORTHO05D006693 6.8e-82 308.1 373 47.7
Psat1g075120 Pisum sativum HOM05D005340 ORTHO05D006693 1.3e-80 303.9 377 47.5
TPR.G32458 Trifolium pratense HOM05D005340 ORTHO05D006693 6.3e-80 301.6 377 48.0
GSVIVG01031043001 Vitis vinifera HOM05D005340 ORTHO05D006693 1.8e-71 273.5 377 43.2
Dinv34831 Davidia involucrata HOM05D005340 ORTHO05D006693 3.5e-70 269.2 377 43.5
Duzib151G0269 Durio zibethinus HOM05D005340 ORTHO05D006693 3.5e-70 269.2 393 42.2
Manes.01G109700 Manihot esculenta HOM05D005340 ORTHO05D006693 1.7e-69 266.9 374 41.4
AUR62023320 Chenopodium quinoa HOM05D005340 ORTHO05D006693 2.9e-69 266.2 385 42.3
TWI74G0404 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 3.9e-69 265.8 379 42.2
AUR62008983 Chenopodium quinoa HOM05D005340 ORTHO05D006693 5.0e-69 265.4 385 42.9
Medtr6g017315 Medicago truncatula HOM05D005340 ORTHO05D006693 5.0e-69 265.4 234 60.3
Ah.16g101850 Amaranthus hybridus HOM05D005340 ORTHO05D006693 8.6e-69 264.6 374 42.5
Gohir.D09G205800 Gossypium hirsutum HOM05D005340 ORTHO05D006693 1.9e-68 263.5 393 41.7
Gorai.006G229700 Gossypium raimondii HOM05D005340 ORTHO05D006693 1.9e-68 263.5 393 41.7
Migut.H00210 Erythranthe guttata HOM05D005340 ORTHO05D006693 2.5e-68 263.1 371 41.5
Atru.chr1.1714 Acer truncatum HOM05D005340 ORTHO05D006693 3.3e-68 262.7 378 42.1
CSS0006515 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 3.3e-68 262.7 376 41.8
COL.COLO4_05461 Corchorus olitorius HOM05D005340 ORTHO05D006693 3.3e-68 262.7 393 41.0
CiPaw.06G148800 Carya illinoinensis HOM05D005340 ORTHO05D006693 5.6e-68 261.9 373 41.8
Thecc.04G135300 Theobroma cacao HOM05D005340 ORTHO05D006693 5.6e-68 261.9 393 41.0
Lj2A443T58 Lonicera japonica HOM05D005340 ORTHO05D006693 9.5e-68 261.2 377 42.2
Gohir.A09G212300 Gossypium hirsutum HOM05D005340 ORTHO05D006693 2.1e-67 260.0 393 41.5
EL10Ac2g04584 Beta vulgaris HOM05D005340 ORTHO05D006693 3.6e-67 259.2 372 41.4
PGR142G3832 Punica granatum HOM05D005340 ORTHO05D006693 3.6e-67 259.2 376 42.3
TAR371G0529 Trochodendron aralioides HOM05D005340 ORTHO05D006693 3.6e-67 259.2 377 42.2
Sc10g0001220 Simmondsia chinensis HOM05D005340 ORTHO05D006693 6.2e-67 258.5 375 41.1
CiPaw.05G042900 Carya illinoinensis HOM05D005340 ORTHO05D006693 1.4e-66 257.3 373 41.3
Potri.017G114100 Populus trichocarpa HOM05D005340 ORTHO05D006693 3.1e-66 256.1 374 41.4
HanXRQChr11g0325001 Helianthus annuus HOM05D005340 ORTHO05D006693 4.0e-66 255.8 374 41.2
MD15G1418600 Malus domestica HOM05D005340 ORTHO05D006693 5.2e-66 255.4 370 42.7
Ciclev10011466m.g Citrus clementina HOM05D005340 ORTHO05D006693 8.9e-66 254.6 384 40.4
TWI77G0603 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 1.2e-65 254.2 379 40.9
Nn8g41264 Nelumbo nucifera HOM05D005340 ORTHO05D006693 1.5e-65 253.8 377 41.4
Prupe.1G562700 Prunus persica HOM05D005340 ORTHO05D006693 2.6e-65 253.1 370 42.2
Aqoxy5G01062 Aquilegia oxysepala HOM05D005340 ORTHO05D006693 3.4e-65 252.7 373 39.9
Haze_01628 Corylus avellana HOM05D005340 ORTHO05D006693 4.4e-65 252.3 375 40.5
Eucgr.F02485 Eucalyptus grandis HOM05D005340 ORTHO05D006693 4.4e-65 252.3 376 41.8
Potri.004G100500 Populus trichocarpa HOM05D005340 ORTHO05D006693 7.5e-65 251.5 363 41.6
DCAR_025917 Daucus carota HOM05D005340 ORTHO05D006693 9.8e-65 251.1 364 41.5
QL02p098613 Quercus lobata HOM05D005340 ORTHO05D006693 1.7e-64 250.4 370 41.1
Rhsim08G0081700 Rhododendron simsii HOM05D005340 ORTHO05D006693 2.9e-64 249.6 377 41.6
Cfa015491 Carpinus fangiana HOM05D005340 ORTHO05D006693 8.3e-64 248.1 375 40.0
ClCG05G011750 Citrullus lanatus HOM05D005340 ORTHO05D006693 8.3e-64 248.1 365 40.0
CsaV3_3G020610 Cucumis sativus L. HOM05D005340 ORTHO05D006693 1.4e-63 247.3 361 39.9
Hund16143 Selenicereus undatus HOM05D005340 ORTHO05D006693 1.4e-63 247.3 364 41.2
SGA_v2.0_scaffold33G13479 Striga asiatica HOM05D005340 ORTHO05D006693 1.4e-63 247.3 374 39.6
RcHm_v2.0_Chr7g0224281 Rosa chinensis HOM05D005340 ORTHO05D006693 2.4e-63 246.5 374 40.1
Sed0021828 Sechium edule HOM05D005340 ORTHO05D006693 1.2e-62 244.2 370 39.7
CANSAT54G1996 Cannabis sativa HOM05D005340 ORTHO05D006693 7.8e-62 241.5 266 50.0
Oeu030776.1 Olea europaea HOM05D005340 ORTHO05D006693 1.0e-61 241.1 373 40.5
PSO675G0345 Papaver somniferum HOM05D005340 ORTHO05D006693 1.0e-61 241.1 373 39.7
SHI22415 Sapria himalayana HOM05D005340 ORTHO05D006693 1.3e-61 240.7 359 39.8
PSO541G3461 Papaver somniferum HOM05D005340 ORTHO05D006693 3.0e-61 239.6 373 39.1
THA.LOC104823863 Tarenaya hassleriana HOM05D005340 ORTHO05D006693 3.0e-61 239.6 370 39.7
Os07g0164500 Oryza sativa ssp. japonica HOM05D005340 ORTHO05D006693 5.0e-61 238.8 369 37.1
Thhalv10027717m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 8.6e-61 238.0 383 40.2
Cc07_g08850 Coffea canephora HOM05D005340 ORTHO05D006693 1.1e-60 237.7 370 39.7
Actinidia17633 Actinidia chinensis HOM05D005340 ORTHO05D006693 1.5e-60 237.3 377 40.3
FvH4_5g30090 Fragaria vesca HOM05D005340 ORTHO05D006693 1.9e-60 236.9 373 39.4
FAN13G0075 Fragaria x ananassa HOM05D005340 ORTHO05D006693 1.9e-60 236.9 373 39.4
vmacro18081 Vaccinium macrocarpon HOM05D005340 ORTHO05D006693 4.3e-60 235.7 227 56.8
Aa31LG9G17070 Aethionema arabicum HOM05D005340 ORTHO05D006693 5.6e-60 235.3 376 39.1
ATR0618G222 Amborella trichopoda HOM05D005340 ORTHO05D006693 9.5e-60 234.6 363 39.7
Nitab4.5_0001569g0090 Nicotiana tabacum HOM05D005340 ORTHO05D006693 9.5e-60 234.6 370 37.8
FAN04G0654 Fragaria x ananassa HOM05D005340 ORTHO05D006693 1.2e-59 234.2 373 39.9
Lsat_1_v5_gn_4_153740 Lactuca sativa HOM05D005340 ORTHO05D006693 1.6e-59 233.8 357 40.1
Nitab4.5_0005199g0080 Nicotiana tabacum HOM05D005340 ORTHO05D006693 1.6e-59 233.8 370 37.3
PGSC0003DMG400012671 Solanum tuberosum HOM05D005340 ORTHO05D006693 3.6e-59 232.6 370 38.4
Sp7g03590 Schrenkiella parvula HOM05D005340 ORTHO05D006693 4.7e-59 232.3 383 38.9
Sopen02g030540 Solanum pennellii HOM05D005340 ORTHO05D006693 4.7e-59 232.3 370 37.8
CAN.G625.8 Capsicum annuum HOM05D005340 ORTHO05D006693 6.2e-59 231.9 370 38.1
unitig_21.g20962 Utricularia gibba HOM05D005340 ORTHO05D006693 6.2e-59 231.9 227 53.3
CARHR291850 Cardamine hirsuta HOM05D005340 ORTHO05D006693 1.4e-58 230.7 229 54.6
Carub.0007s3744 Capsella rubella HOM05D005340 ORTHO05D006693 2.3e-58 229.9 383 38.6
AL7G52120 Arabidopsis lyrata HOM05D005340 ORTHO05D006693 4.0e-58 229.2 383 38.1
Zm00001eb015730 Zea mays HOM05D005340 ORTHO05D006693 4.0e-58 229.2 229 49.8
BcaC02g09648 Brassica carinata HOM05D005340 ORTHO05D006693 6.8e-58 228.4 361 39.6
AT5G38460 Arabidopsis thaliana HOM05D005340 ORTHO05D006693 8.9e-58 228.0 369 38.5
C04p45110 Brassica napus HOM05D005340 ORTHO05D006693 1.5e-57 227.3 361 39.6
BolC4t26090H Brassica oleracea HOM05D005340 ORTHO05D006693 1.5e-57 227.3 361 39.6
A04p11420 Brassica napus HOM05D005340 ORTHO05D006693 2.6e-57 226.5 361 38.8
BraA04t16805Z Brassica rapa HOM05D005340 ORTHO05D006693 5.8e-57 225.3 361 38.8
Solyc02g085860.4 Solanum lycopersicum HOM05D005340 ORTHO05D006693 5.8e-57 225.3 229 50.7
Sabra04G0079500 Salix brachista HOM05D005340 ORTHO05D006693 7.5e-57 224.9 408 36.5
BcaB06g27224 Brassica carinata HOM05D005340 ORTHO05D006693 3.7e-56 222.6 366 38.5
SEGI_23556 Sequoiadendron giganteum HOM05D005340 ORTHO05D006693 8.3e-56 221.5 229 51.5
CDE11G0559 Ceratophyllum demersum HOM05D005340 ORTHO05D006693 2.4e-55 219.9 229 51.1
arahy.Tifrunner.gnm1.ann1.MY1EZ0 Arachis hypogaea HOM05D005340 ORTHO05D006693 1.3e-53 214.2 229 56.8
TAR362G0130 Trochodendron aralioides HOM05D005340 ORTHO05D006693 1.7e-53 213.8 229 52.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.3e-53 213.4 229 47.6
PSO782G4549 Papaver somniferum HOM05D005340 ORTHO05D006693 3.3e-52 209.5 373 36.5
FAN08G3454 Fragaria x ananassa HOM05D005340 ORTHO05D006693 4.3e-52 209.1 428 34.3
FAN18G2890 Fragaria x ananassa HOM05D001225 ORTHO05D006693 3.1e-50 203.0 266 44.7
Pp3c19_22340 Physcomitrium patens HOM05D005340 ORTHO05D006693 3.1e-50 203.0 229 47.6
SMO196G0061 Selaginella moellendorffii HOM05D005340 ORTHO05D006693 2.0e-49 200.3 229 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1419 Anthoceros agrestis HOM05D005340 ORTHO05D006693 1.1e-47 194.5 229 48.0
Mapoly0037s0055 Marchantia polymorpha HOM05D005340 ORTHO05D006693 7.8e-46 188.3 232 44.4
SalBow3G0764 Salvia bowleyana HOM05D005340 ORTHO05D006693 5.1e-45 185.7 370 35.1
CBR_g31513 Chara braunii HOM05D005340 ORTHO05D006693 4.3e-44 182.6 229 44.1
Peaxi162Scf00814g00228 Petunia axillaris HOM05D005340 ORTHO05D006693 2.6e-41 173.3 323 34.7
MELO3C023794.2 Cucumis melo HOM05D005340 ORTHO05D006693 2.2e-40 170.2 377 31.0
Ca_13735_v3 Cicer arietinum L. HOM05D005340 ORTHO05D006693 5.4e-39 165.6 108 75.9
PRCOL_00002185 Prasinoderma coloniale HOM05D005340 ORTHO05D006693 9.3e-39 164.9 228 41.2
Thhalv10017711m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 8.1e-35 151.8 202 46.5
CSS0043838 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 2.4e-31 140.2 137 55.5
MELO3C031783.2 Cucumis melo HOM05D005340 ORTHO05D006693 1.6e-30 137.5 220 36.4
MCO06G120 Micromonas commoda HOM05D005340 ORTHO05D006693 3.9e-29 132.9 234 36.8
Cre16.g690150 Chlamydomonas reinhardtii HOM05D005340 ORTHO05D006693 4.8e-27 125.9 244 35.7
TAR622G0273 Trochodendron aralioides HOM05D005340 ORTHO05D006693 8.4e-24 115.2 83 66.3
AUR62044249 Chenopodium quinoa HOM05D005340 ORTHO05D006693 1.9e-20 104.0 76 64.5
HPP92_001453 Vanilla planifolia HOM05D005340 ORTHO05D006693 3.3e-20 103.2 210 32.9
Cfa024122 Carpinus fangiana HOM05D005340 ORTHO05D006693 9.0e-18 95.1 236 32.2
TAR622G1245 Trochodendron aralioides HOM05D005340 ORTHO05D006693 3.5e-14 83.2 104 47.1
Cpa.g.c31532 Carica papaya HOM05D005340 ORTHO05D006693 1.1e-12 78.2 126 38.9
Zm00001eb179060 Zea mays HOM05D005340 ORTHO05D006693 1.3e-11 74.7 54 61.1
Zm00001eb396150 Zea mays HOM05D005340 ORTHO05D006693 1.6e-11 74.3 54 59.3
Cpa.g.sc179.1 Carica papaya HOM05D005340 ORTHO05D006693 2.8e-11 73.6 53 67.9
HPP92_001348 Vanilla planifolia HOM05D005340 ORTHO05D006693 2.8e-11 73.6 54 63.0
arahy.Tifrunner.gnm1.ann1.9GA3KJ Arachis hypogaea HOM05D005340 ORTHO05D006693 6.3e-11 72.4 102 47.1
MELO3C027204.2 Cucumis melo HOM05D005340 ORTHO05D006693 6.3e-11 72.4 53 64.2
ECA232G2508 Erigeron canadensis HOM05D005340 ORTHO05D006693 6.3e-11 72.4 53 66.0
Zm00001eb380070 Zea mays HOM05D000394 ORTHO05D000299 5.3e-10 69.3 56 58.9
Zm00001eb286130 Zea mays HOM05D005340 ORTHO05D006693 2.0e-09 67.4 53 60.4
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 3.8e-08 63.2 53 56.6
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 3.8e-08 63.2 53 56.6
TAR622G0300 Trochodendron aralioides HOM05D005340 ORTHO05D006693 5.0e-08 62.8 73 47.9
Haze_26463 Corylus avellana HOM05D005340 ORTHO05D006693 1.4e-07 61.2 109 32.1
Haze_26243 Corylus avellana HOM05D005587 ORTHO05D007287 2.1e-06 57.4 174 27.6


User provided reference genes

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