Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-184 648.3 326 100.0
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.4e-176 622.9 326 97.2
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.0e-169 600.1 326 93.6
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.2e-167 593.2 326 92.6
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.9e-154 547.7 323 83.0
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 5.5e-152 541.2 325 83.7
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.6e-151 539.7 324 83.6
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 8.8e-150 533.9 323 80.5
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 6.3e-148 527.7 323 80.8
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.4e-147 525.8 323 80.2
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 5.5e-144 514.6 323 79.3
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 9.4e-144 513.8 323 78.3
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.8e-142 509.6 323 78.9
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 8.0e-135 484.2 322 72.4
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.5e-133 479.9 322 73.0
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 2.8e-132 475.7 323 73.1
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.8e-132 475.7 324 71.6
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 8.2e-132 474.2 321 71.0
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 3.1e-131 472.2 321 71.3
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 3.1e-131 472.2 323 71.2
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 3.5e-130 468.8 321 70.7
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.5e-128 463.4 327 70.0
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.5e-128 462.6 322 69.9
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.5e-128 462.6 323 69.7
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 3.2e-128 462.2 323 69.7
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.2e-127 460.3 323 69.7
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.2e-127 460.3 322 70.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 1.6e-127 459.9 323 68.4
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 2.7e-127 459.1 327 70.0
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.7e-127 459.1 323 69.7
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 3.6e-127 458.8 323 70.0
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 4.7e-127 458.4 323 69.0
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.0e-126 457.2 323 69.0
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.4e-126 456.8 323 69.0
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 1.4e-126 456.8 324 69.4
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 2.0e-125 453.0 324 68.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 2.6e-125 452.6 322 68.6
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.6e-125 452.6 325 67.7
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 3.4e-125 452.2 323 69.7
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 4.4e-125 451.8 322 68.6
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 4.4e-125 451.8 351 67.0
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.4e-125 451.8 332 67.8
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 7.5e-125 451.1 328 68.0
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.7e-124 449.9 321 69.2
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.7e-124 449.9 324 67.9
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.7e-124 448.7 326 69.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 1.4e-123 446.8 321 69.2
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.4e-123 446.8 318 69.2
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.8e-123 446.4 323 66.9
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.8e-123 446.4 323 68.4
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 2.4e-123 446.0 328 67.7
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 4.1e-123 445.3 323 68.1
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 5.4e-123 444.9 324 68.5
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.6e-122 443.4 324 66.7
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 3.5e-122 442.2 322 68.6
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 5.9e-122 441.4 325 68.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 1.7e-121 439.9 359 62.7
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 1.1e-120 437.2 325 65.5
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 1.5e-120 436.8 328 68.3
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.5e-120 436.8 323 65.3
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.9e-120 436.4 325 68.0
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 4.2e-120 435.3 326 66.6
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 4.2e-120 435.3 328 68.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 5.5e-120 434.9 322 65.5
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.5e-120 434.9 325 66.2
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 9.5e-120 434.1 351 65.5
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.2e-119 433.7 325 67.7
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.6e-119 433.3 331 65.6
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.6e-119 433.3 331 65.6
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.6e-119 433.3 323 67.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.8e-119 432.6 321 65.7
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.8e-119 432.6 328 67.7
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.7e-119 431.8 329 68.4
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 4.7e-119 431.8 327 67.0
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 6.1e-119 431.4 327 66.7
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 8.0e-119 431.0 329 68.1
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.4e-118 430.3 326 64.7
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.8e-118 429.9 321 67.9
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.0e-118 428.7 316 68.4
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 4.0e-118 428.7 327 67.6
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 5.2e-118 428.3 327 64.8
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 5.2e-118 428.3 327 64.8
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 5.2e-118 428.3 326 67.2
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.2e-117 427.2 316 67.4
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.6e-117 426.0 330 67.6
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 3.4e-117 425.6 288 71.2
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.4e-117 425.6 329 67.5
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 9.8e-117 424.1 325 63.7
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 9.8e-117 424.1 329 67.2
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.8e-116 422.5 323 66.3
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 4.9e-116 421.8 334 63.5
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 6.3e-116 421.4 323 66.3
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.4e-115 419.5 330 63.3
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.4e-115 418.3 323 66.3
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 2.0e-114 416.4 331 62.8
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.0e-113 414.1 323 65.9
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.0e-113 414.1 322 63.4
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.5e-112 410.2 322 64.3
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 6.4e-108 394.8 290 68.3
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.1e-107 394.0 325 63.7
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 4.1e-107 392.1 499 45.7
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 9.2e-107 391.0 333 61.6
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 7.3e-104 381.3 272 67.6
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.2e-103 380.6 323 60.4
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.8e-103 379.4 262 68.7
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 4.4e-101 372.1 384 53.1
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.1e-99 367.5 262 68.3
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 9.5e-88 327.8 184 88.0
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.3e-84 317.4 342 50.6
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.6e-82 310.5 177 85.9
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.1e-81 305.4 208 71.6
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 7.3e-80 301.6 263 56.7
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.6e-79 300.4 190 76.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.3e-76 290.8 177 77.4
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.9e-75 287.0 168 82.7
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 3.3e-72 276.2 169 77.5
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.3e-70 268.9 181 72.4
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.6e-66 255.8 181 71.3
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.0e-65 253.1 206 61.2
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.7e-52 210.7 158 63.9
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.5e-52 208.8 121 82.6
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.1e-46 189.5 122 73.0
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.9e-46 188.7 129 72.1
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.2e-44 183.7 118 75.4
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.9e-40 170.6 112 73.2
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.3e-40 169.9 151 57.6
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.5e-35 153.7 118 67.8
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.0e-33 148.3 95 77.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 3.7e-23 113.2 75 70.7
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 3.6e-18 96.7 130 44.6
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.6e-13 81.3 158 36.1
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 5.0e-12 76.3 50 74.0
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 4.7e-10 69.7 173 28.9
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.4e-08 63.5 142 32.4
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 6.3e-07 59.3 52 59.6
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.1e-06 58.5 183 29.0
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.1e-06 58.5 144 30.6
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.1e-06 57.0 174 28.7


User provided reference genes

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