Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.8e-153 546.2 341 100.0
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 2.4e-142 509.2 417 81.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.3e-100 369.8 342 71.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.7e-100 368.2 341 76.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.1e-99 367.5 340 72.1
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.9e-94 350.1 339 74.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 8.7e-92 341.3 343 66.2
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.2e-88 330.9 339 69.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 4.2e-86 322.4 339 69.3
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.2e-85 320.9 340 65.6
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.7e-85 319.7 338 71.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.6e-80 303.1 346 64.5
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.6e-80 303.1 346 64.5
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.5e-80 302.4 339 65.8
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 5.9e-80 302.0 341 66.9
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 2.7e-77 293.1 339 65.2
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 4.6e-77 292.4 341 63.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 7.9e-77 291.6 339 66.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.0e-76 291.2 341 65.4
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.9e-76 289.3 339 65.2
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.9e-76 289.3 351 63.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 8.8e-76 288.1 341 63.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.8e-76 288.1 360 61.7
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.6e-75 286.6 347 63.4
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 7.4e-75 285.0 341 64.5
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.3e-74 284.3 348 62.9
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 2.8e-74 283.1 293 71.0
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.8e-74 282.3 335 66.0
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 4.8e-74 282.3 299 69.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.4e-73 280.8 347 63.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.8e-73 280.4 339 64.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.1e-73 279.6 345 62.9
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.3e-73 278.9 359 61.0
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.3e-73 278.9 360 61.1
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.5e-72 277.3 366 60.7
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.5e-72 277.3 347 62.5
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 3.4e-72 276.2 341 62.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.5e-72 275.8 347 62.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.0e-71 274.6 343 61.5
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.9e-71 273.1 281 71.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.8e-71 272.7 342 62.3
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.5e-71 271.6 344 61.3
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-70 270.8 339 62.8
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.4e-70 270.8 339 62.8
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.9e-70 270.4 345 61.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.9e-70 270.4 339 61.7
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.2e-70 269.6 341 61.6
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 9.4e-70 268.1 280 71.4
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.2e-69 267.7 339 61.1
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.2e-69 267.7 339 61.7
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.2e-69 267.7 330 62.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.6e-69 267.3 339 62.2
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-69 267.3 339 62.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.1e-69 266.9 343 59.2
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 4.7e-69 265.8 342 60.2
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 6.1e-69 265.4 393 43.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 7.9e-69 265.0 354 59.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.0e-68 264.6 344 60.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.3e-68 263.5 336 58.0
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.9e-68 262.7 281 71.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.2e-68 262.3 349 60.2
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 5.2e-68 262.3 353 53.5
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 8.8e-68 261.5 343 59.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.5e-67 260.8 341 60.7
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.5e-67 260.8 328 61.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.5e-67 260.8 355 58.6
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 4.4e-67 259.2 355 58.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.4e-67 259.2 345 59.1
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 7.4e-67 258.5 349 59.0
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 7.4e-67 258.5 278 68.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 9.7e-67 258.1 344 61.3
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.7e-66 257.3 339 60.5
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.2e-66 256.9 354 57.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 6.3e-66 255.4 342 58.8
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 6.3e-66 255.4 352 58.0
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.1e-65 254.6 281 67.3
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.4e-65 253.4 339 59.6
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 2.4e-65 253.4 283 64.7
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 4.1e-65 252.7 349 58.5
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.5e-64 249.6 326 61.0
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 7.7e-64 248.4 348 57.2
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.2e-63 246.9 340 59.7
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.1e-62 244.6 338 58.0
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.2e-62 243.0 340 60.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.2e-62 242.7 277 67.5
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.6e-61 240.7 341 58.4
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 6.1e-61 238.8 340 59.1
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.2e-58 230.3 281 55.2
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.8e-58 229.9 342 58.2
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 3.7e-58 229.6 345 54.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.2e-58 228.4 224 54.9
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.3e-57 225.7 303 60.7
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 5.3e-57 225.7 240 52.5
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.2e-56 224.6 348 54.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.7e-56 223.4 338 56.8
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 3.8e-55 219.5 338 57.4
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.5e-54 217.6 181 65.2
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-54 216.9 338 56.2
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.5e-54 216.9 348 55.7
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.1e-53 213.8 295 61.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.8e-52 210.7 276 60.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-52 210.3 246 48.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 3.0e-52 209.9 199 56.8
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.2e-52 209.1 214 53.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.4e-51 206.5 338 55.0
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 5.7e-51 205.7 159 62.3
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.8e-50 203.4 170 58.8
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 4.8e-50 202.6 314 57.0
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.3e-50 201.8 365 36.7
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.9e-48 195.7 339 54.3
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 7.2e-46 188.7 239 67.4
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 8.0e-45 185.3 317 37.5
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 7.5e-43 178.7 283 55.8
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.2e-35 154.8 159 54.1
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 9.8e-35 151.8 190 74.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.1e-33 148.3 190 71.1
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.4e-33 147.9 263 54.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 3.2e-33 146.7 240 61.7
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 9.2e-33 145.2 287 52.6
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.2e-32 144.8 138 54.3
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 6.6e-31 139.0 181 47.0
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.2e-29 134.8 85 74.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.8e-27 125.9 171 44.4
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-26 124.0 172 44.2
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.9e-26 122.9 126 49.2
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 3.2e-25 120.2 277 48.7
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.2e-25 118.6 180 42.2
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.3e-20 104.0 159 74.2
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.5e-19 101.3 107 48.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.5e-19 101.3 63 81.0
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-16 90.9 142 76.1
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.5e-14 84.0 84 52.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.3e-14 83.2 81 50.6
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.7e-13 79.7 128 78.1
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.9e-10 70.5 134 56.0
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.4e-10 69.3 122 77.9
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.9e-07 60.1 35 80.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.1e-07 59.7 53 52.8
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 5.6e-06 56.2 56 50.0


User provided reference genes

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