Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1451.0 753 100.0
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1435.6 753 98.9
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1288.5 753 87.6
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1285.4 753 87.9
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1276.5 753 87.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1272.3 753 86.9
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1267.3 753 86.7
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1265.0 753 86.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1238.4 753 85.5
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1235.7 753 84.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1169.1 755 79.3
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1166.0 755 79.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1163.3 755 78.5
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1152.1 746 77.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1144.0 773 75.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1134.0 753 76.5
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1124.4 755 75.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1116.7 753 75.3
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1116.3 755 75.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1115.9 754 75.5
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1113.6 756 75.5
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1110.9 753 75.0
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1109.4 752 75.4
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1109.4 753 75.2
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1106.7 771 74.7
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1104.7 743 76.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 745 76.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 771 74.6
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1102.4 752 74.1
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1101.7 756 75.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1098.2 755 74.6
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1097.4 755 74.7
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1097.4 753 74.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 750 73.5
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 755 74.6
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1096.6 759 75.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1094.0 753 73.6
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1091.6 747 74.3
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1088.9 754 73.7
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1080.9 756 72.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 0.0e+00 1080.9 634 87.7
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1078.9 757 72.8
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1078.5 747 73.5
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.2e-312 1074.7 755 73.2
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 2.1e-311 1072.0 778 71.2
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 7.7e-311 1070.1 756 72.0
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 3.9e-310 1067.8 753 72.6
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.5e-309 1065.8 754 72.1
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 2.5e-309 1065.1 740 73.2
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 3.3e-309 1064.7 750 73.6
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 3.6e-308 1061.2 751 71.6
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 3.4e-306 1054.7 753 72.6
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.7e-305 1052.4 754 71.2
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.9e-305 1051.6 753 72.6
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 5.4e-304 1047.3 744 71.8
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 3.0e-302 1041.6 745 71.7
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 744 70.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.1e-302 1040.8 750 71.5
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.1e-301 1039.6 753 70.9
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 4.8e-300 1034.2 745 70.2
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.5e-298 1029.2 708 73.4
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.5e-298 1029.2 760 68.4
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 4.2e-296 1021.1 752 69.4
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.2e-295 1019.6 751 70.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.6e-295 1017.7 754 68.6
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 6.0e-295 1017.3 753 69.2
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 6.0e-295 1017.3 753 69.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 3.0e-294 1015.0 750 68.5
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 5.7e-293 1010.7 743 68.2
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.7e-292 1008.1 758 68.2
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.1e-291 1006.5 743 68.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.1e-291 1006.5 747 69.1
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 752 68.8
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 4.1e-291 1004.6 754 68.2
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 4.1e-291 1004.6 747 68.8
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 5.3e-291 1004.2 753 68.8
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.4e-290 1001.5 747 69.2
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 5.8e-290 1000.7 747 69.3
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-289 999.2 758 68.5
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.7e-289 999.2 758 68.5
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 2.9e-289 998.4 753 68.0
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 2.9e-289 998.4 753 68.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.4e-288 996.1 775 66.8
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 7.1e-288 993.8 752 67.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 7.1e-288 993.8 752 67.8
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 7.1e-288 993.8 753 67.6
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 3.5e-287 991.5 750 67.7
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 6.7e-286 987.3 649 81.0
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 7.4e-285 983.8 741 68.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.8e-284 981.1 745 66.8
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.2e-282 976.5 752 66.6
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.2e-282 976.5 771 68.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.8e-281 971.5 746 65.5
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.4e-278 963.0 678 72.3
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.4e-275 952.2 752 66.4
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 5.0e-273 944.5 702 69.7
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 6.5e-273 944.1 747 65.5
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.1e-272 943.3 747 65.6
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.5e-264 916.4 752 63.6
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.2e-263 913.3 726 65.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.0e-254 881.7 656 67.1
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 5.7e-253 877.9 757 62.4
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 9.8e-253 877.1 748 63.0
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 9.8e-253 877.1 748 63.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.1e-251 872.1 756 62.0
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.2e-250 870.2 745 60.7
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.5e-248 863.2 816 58.3
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 2.5e-248 862.4 757 58.5
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.4e-245 851.7 751 59.1
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.2e-244 849.4 727 62.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 6.0e-226 788.1 750 55.5
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 4.0e-222 775.4 721 59.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 7.1e-219 764.6 524 73.3
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 8.1e-215 751.1 532 70.9
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 6.8e-214 748.0 747 54.6
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.2e-211 739.2 525 71.0
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.6e-210 736.9 532 70.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 5.2e-206 721.8 750 51.9
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 6.0e-202 708.4 531 68.7
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.6e-199 699.1 757 50.1
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.8e-198 696.8 752 50.1
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.0e-185 652.9 739 49.0
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.4e-174 617.5 749 48.9
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 9.0e-166 588.2 387 78.8
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 9.4e-155 551.6 607 50.1
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 4.7e-146 522.7 471 64.1
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 8.8e-137 491.9 388 64.7
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.2e-125 454.9 345 66.7
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 5.4e-110 402.9 728 34.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.0e-88 331.3 760 29.2
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.9e-84 317.0 224 71.0
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 4.0e-81 307.0 838 29.0
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.4e-78 296.6 222 69.8
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 7.6e-72 276.2 513 38.6
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.2e-55 221.5 222 56.3
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.7e-53 214.5 202 60.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.4e-49 201.4 121 84.3
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 6.7e-44 183.3 102 91.2
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.4e-36 159.1 197 45.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-36 159.1 136 66.2
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.8e-31 141.0 91 76.9
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.0e-28 132.9 113 61.9
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.4e-28 132.5 236 41.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.8e-25 122.1 115 56.5
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 5.3e-25 120.6 235 37.4
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 5.3e-25 120.6 95 71.6
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.1e-25 119.8 80 73.8
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.3e-23 115.9 81 76.5
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.5e-19 100.1 75 64.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.4e-17 95.1 56 89.3
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.7e-16 91.7 98 48.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.1e-14 86.3 96 43.8
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 3.3e-14 84.7 139 35.3
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-12 79.3 79 60.8
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.2e-12 77.4 65 61.5
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.2e-11 76.3 117 41.9
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 2.0e-11 75.5 101 47.5
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 3.4e-11 74.7 65 60.0
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 5.7e-11 73.9 64 60.9
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 2.8e-10 71.6 67 61.2
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.3e-10 70.5 64 56.2
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.6e-07 60.5 64 54.7
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 1.1e-06 59.7 57 59.6
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 3.3e-06 58.2 64 53.1
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 3.3e-06 58.2 55 58.2


User provided reference genes

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