Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-167 592.8 296 100.0
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.5e-143 512.3 296 89.9
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 5.1e-96 355.1 232 81.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 4.3e-95 352.1 235 79.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.6e-94 350.1 235 78.3
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 3.6e-94 349.0 239 79.1
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 6.2e-94 348.2 238 76.9
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 8.1e-94 347.8 236 79.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.4e-92 342.4 230 78.3
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.4e-92 342.4 237 78.5
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.9e-90 336.7 237 76.8
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.4e-90 336.3 239 74.5
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 4.2e-90 335.5 239 74.1
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.4e-90 335.1 229 75.1
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.4e-90 335.1 236 75.0
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-89 334.0 236 74.6
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-89 332.8 237 77.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.5e-89 332.4 236 74.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.3e-88 330.5 230 77.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.9e-88 328.9 236 73.3
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.1e-88 328.6 228 73.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.6e-88 328.2 230 76.1
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.6e-88 328.2 230 76.1
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 6.6e-88 328.2 230 76.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.5e-87 327.0 253 69.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-87 327.0 237 73.0
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 7.3e-87 324.7 239 72.8
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 7.3e-87 324.7 237 72.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 9.6e-87 324.3 228 73.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.3e-86 323.9 238 73.5
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.1e-86 323.2 230 75.2
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 3.6e-86 322.4 232 74.1
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 6.2e-86 321.6 239 73.6
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 8.1e-86 321.2 230 74.8
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-85 320.9 235 71.1
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-85 320.9 235 71.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.1e-85 320.9 227 74.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.4e-85 320.5 243 72.8
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.8e-85 320.1 237 73.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.3e-85 318.5 237 73.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.0e-85 317.8 236 71.6
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.0e-85 317.8 236 71.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.0e-85 317.8 236 71.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.0e-85 317.8 236 71.6
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.0e-85 317.8 236 69.5
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.2e-84 317.4 234 72.2
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.5e-84 317.0 240 71.7
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.0e-84 316.6 236 71.2
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.5e-84 315.5 236 69.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.7e-83 313.5 236 69.1
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.2e-83 313.2 234 70.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.2e-83 313.2 236 70.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.9e-83 312.8 229 72.5
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-83 312.8 236 70.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.9e-83 312.8 237 71.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.9e-83 312.8 240 70.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.9e-83 312.8 236 70.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 4.9e-83 312.0 230 72.2
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 6.4e-83 311.6 239 70.3
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 6.4e-83 311.6 237 71.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.4e-82 309.7 237 69.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.4e-82 309.7 245 68.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.2e-82 309.3 233 71.2
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 7.1e-82 308.1 236 70.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 7.1e-82 308.1 233 71.2
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 9.3e-82 307.8 229 70.3
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.2e-81 307.4 229 70.7
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.2e-81 307.4 233 71.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.6e-81 307.0 234 69.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.3e-80 303.9 232 72.4
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.0e-80 302.8 237 69.6
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.9e-80 302.4 227 71.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 6.7e-80 301.6 237 69.6
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.5e-79 300.4 242 68.6
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.9e-79 300.1 233 69.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.5e-79 299.7 240 68.3
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 9.6e-79 297.7 240 67.5
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 9.6e-79 297.7 231 68.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 9.6e-79 297.7 232 69.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.6e-78 295.8 206 73.8
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.6e-78 295.8 233 69.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.1e-77 294.3 233 68.7
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.4e-77 293.9 231 66.7
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.4e-77 293.9 248 64.5
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.8e-77 293.5 239 65.3
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.8e-77 293.5 243 65.4
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-77 292.7 231 67.1
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.1e-77 292.7 234 65.4
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.1e-77 292.7 248 65.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.0e-77 292.4 239 65.7
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-76 290.8 244 65.2
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-76 290.8 233 67.8
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.5e-76 290.4 239 64.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.0e-76 290.0 239 64.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.6e-76 289.7 218 69.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.4e-76 289.3 242 65.7
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 7.6e-76 288.1 242 64.9
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 9.9e-76 287.7 242 64.9
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 9.9e-76 287.7 247 64.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 9.9e-76 287.7 242 64.9
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 9.9e-76 287.7 239 67.8
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.9e-75 286.2 227 66.1
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.8e-75 285.8 240 67.5
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-74 283.5 246 65.0
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.4e-74 283.1 229 64.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 3.2e-74 282.7 238 63.4
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.5e-74 282.0 234 62.8
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.5e-74 282.0 229 68.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.6e-73 280.4 246 64.2
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.6e-73 280.4 247 64.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.7e-73 279.6 302 55.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 3.5e-73 279.3 231 63.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.5e-73 279.3 229 64.6
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.3e-72 277.3 234 62.0
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.5e-71 273.9 311 53.4
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.3e-71 272.7 232 64.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.3e-70 270.8 232 61.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.3e-70 270.8 233 63.1
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.4e-69 267.3 237 62.9
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-69 267.3 237 62.9
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.4e-69 267.3 237 62.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.8e-69 266.9 207 68.6
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.1e-69 266.2 236 62.7
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 4.0e-69 265.8 225 64.9
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 5.3e-69 265.4 229 62.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 6.9e-69 265.0 241 63.9
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.6e-68 263.1 231 61.9
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.5e-68 262.3 191 71.2
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.2e-67 260.0 235 60.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.2e-67 260.0 225 59.1
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.4e-67 258.1 237 58.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.2e-65 254.2 235 58.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 5.1e-64 248.8 248 55.6
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 8.7e-64 248.1 235 61.3
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.9e-63 246.9 227 58.6
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.4e-61 240.7 304 48.4
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.0e-60 236.9 224 60.3
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.6e-60 236.5 135 83.7
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.2e-58 229.2 166 69.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.1e-57 226.9 166 68.1
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.7e-57 226.5 166 68.7
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.1e-55 221.1 229 53.7
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 3.7e-54 216.1 249 50.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.1e-53 212.6 129 79.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 4.5e-52 209.1 122 82.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.8e-48 197.2 228 50.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.7e-46 189.5 105 86.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.7e-46 189.5 250 46.8
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-45 188.0 192 55.7
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 5.9e-44 182.2 260 42.7
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 7.9e-41 171.8 101 83.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.2e-34 149.8 270 38.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.0e-32 144.8 265 37.7
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-32 144.1 73 98.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 7.5e-31 138.7 73 94.5
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 7.5e-31 138.7 129 65.9
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.6e-28 131.0 103 72.8
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.0e-27 125.9 126 59.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.0e-24 116.7 95 61.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.2e-22 110.5 91 54.9
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 5.9e-20 102.4 88 62.5
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.2e-16 89.4 90 45.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.0e-15 87.4 122 49.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 2.2e-14 84.0 96 39.6
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 4.9e-14 82.8 54 70.4
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.8e-12 75.5 78 55.1
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.6e-10 69.3 81 46.9
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 9.5e-10 68.6 88 54.5
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.8e-08 64.3 160 30.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.5e-07 61.2 133 41.4


User provided reference genes

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