Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.1e-53 213.0 107 100.0
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 3.3e-53 211.5 107 99.1
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 4.4e-34 147.9 97 73.2
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 5.6e-29 131.0 84 75.0
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.6e-28 129.4 89 73.0
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 3.6e-28 128.3 95 68.4
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 3.6e-28 128.3 88 71.6
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.8e-27 125.9 89 68.5
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.4e-24 116.3 94 58.5
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 5.4e-24 114.4 102 60.8
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 7.1e-24 114.0 85 63.5
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 1.2e-23 113.2 84 65.5
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 3.5e-23 111.7 80 61.2
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.3e-22 109.8 90 64.4
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 5.1e-22 107.8 85 57.6
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 5.1e-22 107.8 85 57.6
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 8.7e-22 107.1 93 57.0
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.1e-21 106.7 102 52.9
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.1e-21 106.7 89 57.3
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.9e-21 105.9 93 52.7
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.5e-21 105.5 85 56.5
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 3.3e-21 105.1 81 58.0
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 4.3e-21 104.8 97 53.6
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 5.6e-21 104.4 82 59.8
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 7.4e-21 104.0 83 59.0
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 9.6e-21 103.6 85 56.5
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.1e-20 102.4 86 57.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.7e-20 101.7 73 65.8
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.1e-19 100.1 95 52.6
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.1e-19 100.1 78 61.5
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 1.8e-19 99.4 92 52.2
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.8e-19 99.4 85 50.6
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.8e-19 99.4 83 57.8
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 2.4e-19 99.0 92 54.3
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 4.0e-19 98.2 79 62.0
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 5.3e-19 97.8 85 52.9
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 6.9e-19 97.4 82 57.3
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 2.0e-18 95.9 92 53.3
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 3.4e-18 95.1 94 52.1
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 5.8e-18 94.4 87 50.6
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 7.6e-18 94.0 95 48.4
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 7.6e-18 94.0 88 48.9
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.9e-17 92.0 88 46.6
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 2.9e-17 92.0 85 48.2
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.9e-17 92.0 94 48.9
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 3.8e-17 91.7 88 46.6
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 3.8e-17 91.7 88 46.6
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 6.4e-17 90.9 83 51.8
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 6.4e-17 90.9 77 55.8
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 8.4e-17 90.5 88 46.6
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.4e-16 89.7 94 46.8
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 3.2e-16 88.6 69 63.8
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 7.1e-16 87.4 88 52.3
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 9.3e-16 87.0 85 51.8
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 1.6e-15 86.3 77 51.9
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.6e-15 86.3 80 52.5
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.1e-15 85.9 82 47.6
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 2.1e-15 85.9 72 59.7
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.1e-15 85.9 83 54.2
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.7e-15 85.5 66 62.1
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 3.5e-15 85.1 76 57.9
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 3.5e-15 85.1 91 50.5
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 3.5e-15 85.1 88 50.0
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 4.6e-15 84.7 74 55.4
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 6.0e-15 84.3 87 52.9
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.0e-14 83.6 79 54.4
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.0e-14 83.6 75 52.0
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.3e-14 83.2 87 49.4
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 2.3e-14 82.4 72 58.3
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 2.3e-14 82.4 98 45.9
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 3.0e-14 82.0 67 58.2
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 3.0e-14 82.0 79 53.2
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 3.0e-14 82.0 88 48.9
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 3.9e-14 81.6 67 58.2
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 5.1e-14 81.3 74 50.0
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.1e-13 80.1 81 48.1
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 9.6e-13 77.0 109 37.6
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.6e-12 76.3 85 45.9
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.6e-12 76.3 85 45.9
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.1e-12 75.9 85 44.7
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.1e-12 75.9 85 44.7
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.1e-12 75.9 78 47.4
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 4.8e-12 74.7 58 60.3
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 6.2e-12 74.3 89 44.9
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 6.2e-12 74.3 58 58.6
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 6.2e-12 74.3 58 58.6
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.1e-11 73.6 85 43.5
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.1e-11 73.6 85 43.5
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.1e-11 73.6 85 43.5
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.1e-11 73.6 69 53.6
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 1.8e-11 72.8 58 58.6
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.4e-11 72.4 67 53.7
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 3.1e-11 72.0 79 49.4
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 6.9e-11 70.9 76 52.6
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 9.0e-11 70.5 69 50.7
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 9.0e-11 70.5 70 50.0
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.2e-10 70.1 92 43.5
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 2.0e-10 69.3 56 64.3
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.6e-10 68.9 79 49.4
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 7.6e-10 67.4 60 51.7
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.0e-09 67.0 78 48.7
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.0e-09 67.0 94 40.4
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.0e-09 67.0 69 44.9
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.0e-09 67.0 69 44.9
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.0e-09 67.0 68 48.5
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 4.9e-09 64.7 48 66.7
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 4.9e-09 64.7 93 38.7
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.9e-08 62.8 50 60.0
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 2.5e-08 62.4 77 46.8
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 2.5e-08 62.4 77 46.8
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 1.2e-07 60.1 73 41.1
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 8.7e-06 53.9 92 37.0


User provided reference genes

Program Settings