Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9KCK2Z Arachis hypogaea HOM05D002111 ORTHO05D002160 3.0e-88 328.6 173 100.0
arahy.Tifrunner.gnm1.ann1.73PCSA Arachis hypogaea HOM05D002111 ORTHO05D002160 2.3e-64 249.2 222 67.1
arahy.Tifrunner.gnm1.ann1.3BEA17 Arachis hypogaea HOM05D002111 ORTHO05D002160 5.1e-64 248.1 222 66.7
arahy.Tifrunner.gnm1.ann1.Y5XA6S Arachis hypogaea HOM05D002111 ORTHO05D002160 8.8e-40 167.5 135 71.1
Glyma.11G240100 Glycine max HOM05D002111 ORTHO05D002160 7.2e-26 121.3 224 43.3
Glyma.18G017300 Glycine max HOM05D002111 ORTHO05D002160 1.2e-25 120.6 223 42.6
Ca_16527_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 8.0e-25 117.9 220 41.8
Ca_16529_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 8.0e-25 117.9 220 41.8
VMungo1383G1142 Vigna mungo HOM05D002111 ORTHO05D002160 3.3e-23 112.5 227 43.2
Phvul.001G252100 Phaseolus vulgaris HOM05D002111 ORTHO05D002160 5.7e-23 111.7 229 41.9
Psat5g090000 Pisum sativum HOM05D002111 ORTHO05D002160 1.8e-21 106.7 203 40.4
Lj6g0025700 Lotus japonicus HOM05D002111 ORTHO05D002160 5.3e-21 105.1 215 42.3
Eucgr.H04786 Eucalyptus grandis HOM05D002111 ORTHO05D002160 2.6e-20 102.8 226 38.1
Medtr3g087230 Medicago truncatula HOM05D002111 ORTHO05D002160 4.5e-20 102.1 220 39.5
arahy.Tifrunner.gnm1.ann1.V4LFQL Arachis hypogaea HOM05D002111 ORTHO05D002160 1.7e-19 100.1 211 39.8
CiPaw.04G099300 Carya illinoinensis HOM05D002111 ORTHO05D002160 2.2e-19 99.8 221 39.4
Duzib147G0507 Durio zibethinus HOM05D002111 ORTHO05D002160 2.9e-19 99.4 215 39.5
QL06p049551 Quercus lobata HOM05D002111 ORTHO05D002160 2.9e-19 99.4 221 38.9
Manes.12G135100 Manihot esculenta HOM05D002111 ORTHO05D002160 3.8e-19 99.0 219 40.2
Ciclev10025897m.g Citrus clementina HOM05D002111 ORTHO05D002160 1.1e-18 97.4 221 38.5
Thecc.01G101700 Theobroma cacao HOM05D002111 ORTHO05D002160 1.1e-18 97.4 215 40.5
arahy.Tifrunner.gnm1.ann1.BXB75N Arachis hypogaea HOM05D002111 ORTHO05D002160 1.9e-18 96.7 214 38.8
TPR.G17844 Trifolium pratense HOM05D002111 ORTHO05D002160 1.9e-18 96.7 215 38.1
RcHm_v2.0_Chr2g0114391 Rosa chinensis HOM05D002111 ORTHO05D002160 7.2e-18 94.7 221 37.6
PGR102G2983 Punica granatum HOM05D002111 ORTHO05D002160 3.6e-17 92.4 216 39.4
TWI53G1715 Tripterygium wilfordii HOM05D002111 ORTHO05D002160 3.6e-17 92.4 213 36.2
Gorai.008G096200 Gossypium raimondii HOM05D002111 ORTHO05D002160 8.0e-17 91.3 216 36.6
Lj4g0003424 Lotus japonicus HOM05D002111 ORTHO05D002160 8.0e-17 91.3 216 35.2
FAN23G1977 Fragaria x ananassa HOM05D002111 ORTHO05D002160 1.0e-16 90.9 220 36.8
MD15G1324300 Malus domestica HOM05D002111 ORTHO05D002160 1.0e-16 90.9 217 35.9
Prupe.6G186700 Prunus persica HOM05D002111 ORTHO05D002160 1.4e-16 90.5 220 36.4
Ca_17736_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 2.3e-16 89.7 212 37.7
Potri.005G075800 Populus trichocarpa HOM05D002111 ORTHO05D002160 2.3e-16 89.7 217 36.9
Haze_24935 Corylus avellana HOM05D002111 ORTHO05D002160 3.0e-16 89.4 222 37.8
Duzib264G1191 Durio zibethinus HOM05D002111 ORTHO05D002160 4.0e-16 89.0 214 37.4
Gohir.D12G085900 Gossypium hirsutum HOM05D002111 ORTHO05D002160 5.2e-16 88.6 216 35.2
Hma1.2p1_0047F.1_g027840 Hydrangea macrophylla HOM05D002111 ORTHO05D002160 8.8e-16 87.8 219 37.0
CsaV3_4G008920 Cucumis sativus L. HOM05D002111 ORTHO05D002160 2.0e-15 86.7 217 38.2
Gohir.A02G143300 Gossypium hirsutum HOM05D002111 ORTHO05D002160 2.0e-15 86.7 222 35.6
ClCG10G008810 Citrullus lanatus HOM05D002111 ORTHO05D002160 2.6e-15 86.3 216 38.4
Rhsim10G0163000 Rhododendron simsii HOM05D002111 ORTHO05D002160 3.4e-15 85.9 223 36.8
Lalb_Chr12g0203821 Lupinus albus HOM05D002111 ORTHO05D002160 4.4e-15 85.5 209 38.8
Potri.007G092700 Populus trichocarpa HOM05D002111 ORTHO05D002160 4.4e-15 85.5 226 38.5
Sed0022569 Sechium edule HOM05D002111 ORTHO05D002160 5.7e-15 85.1 213 36.6
MELO3C018977.2 Cucumis melo HOM05D002111 ORTHO05D002160 7.5e-15 84.7 216 37.0
Phvul.002G255900 Phaseolus vulgaris HOM05D002111 ORTHO05D002160 7.5e-15 84.7 222 36.0
Cfa002666 Carpinus fangiana HOM05D002111 ORTHO05D002160 9.8e-15 84.3 219 36.1
Nitab4.5_0003629g0050 Nicotiana tabacum HOM05D002111 ORTHO05D002160 1.3e-14 84.0 213 36.2
Atru.chr4.66 Acer truncatum HOM05D002111 ORTHO05D002160 1.7e-14 83.6 215 35.3
Nitab4.5_0000104g0060 Nicotiana tabacum HOM05D002111 ORTHO05D002160 2.2e-14 83.2 211 37.0
Gohir.D03G037200 Gossypium hirsutum HOM05D002111 ORTHO05D002160 2.8e-14 82.8 224 35.7
Sabra07G0076900 Salix brachista HOM05D002111 ORTHO05D002160 2.8e-14 82.8 226 36.3
CiPaw.03G141700 Carya illinoinensis HOM05D002111 ORTHO05D002160 4.8e-14 82.0 220 37.3
CDE10G1312 Ceratophyllum demersum HOM05D002111 ORTHO05D002160 4.8e-14 82.0 195 38.5
Medtr8g090235 Medicago truncatula HOM05D002111 ORTHO05D002160 4.8e-14 82.0 208 36.1
THA.LOC104807695 Tarenaya hassleriana HOM05D002111 ORTHO05D002160 4.8e-14 82.0 220 35.9
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 6.3e-14 81.6 219 35.2
CANSAT01G1806 Cannabis sativa HOM05D002111 ORTHO05D002160 1.1e-13 80.9 219 34.7
THA.LOC104824875 Tarenaya hassleriana HOM05D002111 ORTHO05D002160 1.1e-13 80.9 216 35.2
Gorai.003G039000 Gossypium raimondii HOM05D002111 ORTHO05D002160 1.8e-13 80.1 219 35.2
Glyma.08G135900 Glycine max HOM05D002111 ORTHO05D002160 4.1e-13 79.0 210 33.3
Ah.03g143530 Amaranthus hybridus HOM05D002111 ORTHO05D002160 7.0e-13 78.2 259 31.7
Actinidia20017 Actinidia chinensis HOM05D002111 ORTHO05D002160 1.2e-12 77.4 215 36.3
CAN.G842.1 Capsicum annuum HOM05D002111 ORTHO05D002160 1.6e-12 77.0 215 35.3
Migut.H02361 Erythranthe guttata HOM05D002111 ORTHO05D002160 1.6e-12 77.0 215 34.4
TAR625G1521 Trochodendron aralioides HOM05D002111 ORTHO05D002160 1.6e-12 77.0 215 35.3
CSS0037925 Camellia sinensis var. sinensis HOM05D002111 ORTHO05D002160 2.0e-12 76.6 222 35.6
FAN28G1556 Fragaria x ananassa HOM05D002111 ORTHO05D002160 2.7e-12 76.3 220 33.6
Peaxi162Scf00212g00717 Petunia axillaris HOM05D002111 ORTHO05D002160 2.7e-12 76.3 218 35.3
Sopen04g025040 Solanum pennellii HOM05D002111 ORTHO05D002160 1.3e-11 73.9 216 34.7
TAR381G0049 Trochodendron aralioides HOM05D002111 ORTHO05D002160 1.3e-11 73.9 222 34.7
vmacro12956 Vaccinium macrocarpon HOM05D002111 ORTHO05D002160 1.3e-11 73.9 224 34.4
MSTRG.23342 Avicennia marina HOM05D002111 ORTHO05D002160 1.7e-11 73.6 214 33.6
RcHm_v2.0_Chr2g0114361 Rosa chinensis HOM05D002111 ORTHO05D002160 2.2e-11 73.2 232 34.9
Solyc04g055180.3 Solanum lycopersicum HOM05D002111 ORTHO05D002160 2.9e-11 72.8 216 34.3
PGSC0003DMG400001887 Solanum tuberosum HOM05D002111 ORTHO05D002160 5.0e-11 72.0 216 34.7
unitig_78.g29621 Utricularia gibba HOM05D002111 ORTHO05D002160 6.5e-11 71.6 211 31.8
AT4G39870 Arabidopsis thaliana HOM05D002111 ORTHO05D002160 8.5e-11 71.2 237 32.1
AUR62003791 Chenopodium quinoa HOM05D002111 ORTHO05D002160 1.5e-10 70.5 210 33.8
FvH4_1g20920 Fragaria vesca HOM05D002111 ORTHO05D002160 1.9e-10 70.1 221 32.6
Aa31LG6G15400 Aethionema arabicum HOM05D002111 ORTHO05D002160 2.5e-10 69.7 213 35.7
unitig_749.g14225 Utricularia gibba HOM05D002111 ORTHO05D002160 2.5e-10 69.7 210 31.4
FAN26G0864 Fragaria x ananassa HOM05D002111 ORTHO05D002160 7.2e-10 68.2 220 33.2
RcHm_v2.0_Chr2g0113791 Rosa chinensis HOM05D002111 ORTHO05D002160 7.2e-10 68.2 88 53.4
Os06g0221100 Oryza sativa ssp. japonica HOM05D002111 ORTHO05D002160 1.2e-09 67.4 211 33.2
Zm00001eb194150 Zea mays HOM05D002111 ORTHO05D002160 1.2e-09 67.4 212 34.0
FAN19G2413 Fragaria x ananassa HOM05D002111 ORTHO05D002160 2.1e-09 66.6 221 31.2
Lj4C905G5 Lonicera japonica HOM05D002111 ORTHO05D002160 2.7e-09 66.2 166 33.7
RcHm_v2.0_Chr2g0113891 Rosa chinensis HOM05D002111 ORTHO05D002160 2.7e-09 66.2 178 34.3
Sp7g36020 Schrenkiella parvula HOM05D002111 ORTHO05D002160 2.7e-09 66.2 231 32.0
COL.COLO4_09962 Corchorus olitorius HOM05D002111 ORTHO05D002160 3.6e-09 65.9 219 32.0
PSO447G0066 Papaver somniferum HOM05D002111 ORTHO05D002160 3.6e-09 65.9 213 33.8
MBI02_g08726_MAGBIO Magnolia biondii HOM05D002111 ORTHO05D002160 4.7e-09 65.5 219 32.9
PSO210G4458 Papaver somniferum HOM05D002111 ORTHO05D002160 6.1e-09 65.1 213 33.3
AUR62002011 Chenopodium quinoa HOM05D002111 ORTHO05D002160 8.0e-09 64.7 99 45.5
Carub.0007s0180 Capsella rubella HOM05D002111 ORTHO05D002160 1.8e-08 63.5 234 32.1
EL10Ac6g15101 Beta vulgaris HOM05D002111 ORTHO05D002160 2.3e-08 63.2 245 31.8
AL7G12110 Arabidopsis lyrata HOM05D002111 ORTHO05D002160 5.2e-08 62.0 233 30.9
Aqoxy5G01897 Aquilegia oxysepala HOM05D002111 ORTHO05D002160 1.2e-07 60.8 213 31.5
Hund13626 Selenicereus undatus HOM05D002111 ORTHO05D002160 1.5e-07 60.5 230 31.3
CARHR246830 Cardamine hirsuta HOM05D002111 ORTHO05D002160 3.4e-07 59.3 250 30.4
DCAR_010085 Daucus carota HOM05D002111 ORTHO05D002160 3.4e-07 59.3 212 31.1
Hund16283 Selenicereus undatus HOM05D002111 ORTHO05D002160 4.4e-07 58.9 223 31.4
Zm00001eb372700 Zea mays HOM05D002111 ORTHO05D002160 4.4e-07 58.9 210 28.1
A03p65850 Brassica napus HOM05D002111 ORTHO05D002160 5.7e-07 58.5 204 33.8
BraA03t15637Z Brassica rapa HOM05D002111 ORTHO05D002160 5.7e-07 58.5 204 33.8
Cpa.g.c38732 Carica papaya HOM05D002111 ORTHO05D002160 7.5e-07 58.2 69 47.8
Thhalv10024527m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 7.5e-07 58.2 246 29.3
SGA_v2.0_scaffold111G31519 Striga asiatica HOM05D002111 ORTHO05D002160 7.5e-07 58.2 218 31.2
Sc03g0002090 Simmondsia chinensis HOM05D002111 ORTHO05D002160 9.8e-07 57.8 231 31.6
ECA238G0151 Erigeron canadensis HOM05D002111 ORTHO05D002160 2.8e-06 56.2 204 30.9
Gohir.A12G087800 Gossypium hirsutum HOM05D002111 ORTHO05D002160 4.9e-06 55.5 90 40.0


User provided reference genes

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