Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.8e-190 669.1 343 100.0
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 5.6e-147 524.6 353 82.4
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 6.0e-133 478.0 343 74.1
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 5.3e-129 464.9 346 73.4
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.0e-128 463.0 347 73.2
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.9e-126 456.4 352 70.7
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 6.0e-125 451.4 347 70.0
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 7.9e-125 451.1 354 70.9
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.9e-123 446.4 331 71.0
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 9.0e-121 437.6 346 69.4
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 9.0e-121 437.6 344 68.6
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 4.5e-120 435.3 337 68.5
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 4.5e-120 435.3 342 66.1
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 5.8e-120 434.9 342 67.5
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.3e-119 433.7 348 67.2
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.9e-119 431.8 339 68.4
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 6.4e-119 431.4 352 65.9
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.1e-118 430.6 351 67.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.9e-118 429.9 340 67.9
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 3.2e-118 429.1 348 66.4
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 5.5e-118 428.3 319 69.9
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 7.1e-118 427.9 351 66.4
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 7.1e-118 427.9 351 67.2
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 9.3e-118 427.6 351 66.4
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.2e-117 427.2 316 70.9
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.2e-117 427.2 310 71.9
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.6e-117 426.8 350 68.0
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-117 425.6 347 66.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 3.5e-117 425.6 346 67.1
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 3.5e-117 425.6 349 66.2
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 4.6e-117 425.2 291 72.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 4.6e-117 425.2 314 71.7
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 6.0e-117 424.9 347 67.1
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.0e-117 424.9 345 66.7
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.3e-116 423.7 343 65.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.8e-116 423.3 337 67.7
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.8e-116 423.3 351 65.5
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 6.7e-116 421.4 298 72.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 6.7e-116 421.4 353 66.0
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.5e-115 419.5 330 68.2
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 5.6e-115 418.3 354 65.3
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 5.6e-115 418.3 331 68.0
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.4e-115 417.9 354 65.8
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 7.4e-115 417.9 349 65.6
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 7.4e-115 417.9 349 65.6
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 9.6e-115 417.5 354 65.8
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 3.7e-114 415.6 308 70.8
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 4.8e-114 415.2 347 63.7
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 4.8e-114 415.2 352 64.8
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.4e-113 413.7 337 64.1
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 2.4e-113 412.9 312 67.9
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 2.4e-113 412.9 350 64.0
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 2.4e-113 412.9 349 65.6
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 3.1e-113 412.5 351 64.7
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 5.3e-113 411.8 354 63.3
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.9e-113 411.4 252 79.4
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 9.0e-113 411.0 311 67.8
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.0e-112 409.8 332 66.9
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 3.4e-112 409.1 344 64.8
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.5e-112 408.7 365 62.5
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 7.6e-112 407.9 269 74.0
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.7e-111 406.8 353 64.6
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.7e-111 406.8 295 71.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.7e-111 406.8 338 66.3
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 2.2e-111 406.4 354 63.3
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 2.9e-111 406.0 346 64.7
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.9e-111 405.2 350 63.1
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 6.5e-111 404.8 324 67.0
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.9e-110 403.3 337 65.6
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.5e-110 402.9 334 65.6
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 7.1e-110 401.4 339 63.1
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 7.1e-110 401.4 339 63.1
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.6e-109 400.2 344 64.2
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 2.7e-109 399.4 348 62.6
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 2.7e-109 399.4 348 62.6
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 2.7e-109 399.4 302 69.9
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 6.0e-109 398.3 377 57.6
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.3e-108 397.1 342 64.0
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 3.0e-108 396.0 333 62.8
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 3.9e-108 395.6 348 61.5
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.5e-107 393.7 332 65.7
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 8.2e-106 387.9 293 68.9
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.1e-105 387.5 252 77.0
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.1e-105 387.5 323 66.6
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 4.1e-105 385.6 255 74.5
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.6e-104 382.9 319 63.6
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 7.7e-104 381.3 330 62.7
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.8e-100 370.2 336 60.1
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 3.9e-100 369.0 300 66.7
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 5.7e-99 365.2 226 77.9
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 8.2e-98 361.3 356 59.8
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 8.2e-98 361.3 314 62.4
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 5.1e-92 342.0 299 64.5
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 4.5e-88 328.9 345 51.6
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 1.0e-84 317.8 309 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 5.5e-78 295.4 292 53.1
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-73 280.8 163 84.7
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 4.5e-72 275.8 340 46.8
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.1e-69 266.9 338 47.9
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.1e-65 254.6 170 72.4
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 2.4e-65 253.4 351 42.5
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.5e-59 234.2 184 62.5
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.4e-57 226.9 141 76.6
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 5.4e-57 225.7 221 47.5
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-52 211.1 126 83.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-52 211.1 126 83.3
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.1e-49 201.4 134 76.9
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 7.8e-48 195.3 169 63.3
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.8e-45 186.8 132 71.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.4e-44 184.5 354 33.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 3.4e-35 153.3 353 32.9
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 1.0e-31 141.7 108 70.4
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 5.1e-31 139.4 255 35.3
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 4.7e-29 132.9 160 55.0
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 3.0e-23 113.6 85 67.1
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-19 101.3 201 37.3
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 9.9e-19 98.6 92 54.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 1.3e-18 98.2 80 58.8
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 4.9e-18 96.3 53 84.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 4.9e-10 69.7 138 41.3
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 6.4e-10 69.3 129 36.4
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 5.4e-09 66.2 129 35.7
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 9.3e-09 65.5 38 81.6
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.0e-07 62.0 43 67.4
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.0e-07 62.0 43 67.4
Pp3c14_19950 Physcomitrium patens HOM05D011014 ORTHO05D018390 2.3e-07 60.8 243 27.2


User provided reference genes

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