Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-301 1038.9 538 100.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 7.1e-298 1026.5 538 98.0
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 8.5e-251 870.2 548 83.0
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 9.8e-231 803.5 547 77.1
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.3e-230 803.1 544 77.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.7e-230 802.7 544 77.6
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.2e-230 802.4 546 77.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 9.2e-229 797.0 548 76.8
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.5e-226 789.6 544 76.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 4.6e-220 768.1 547 73.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 4.3e-210 734.9 546 72.5
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 8.9e-208 727.2 547 71.5
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 4.6e-204 714.9 546 67.8
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-202 709.9 547 70.2
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 4.7e-201 704.9 546 67.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.4e-200 702.6 546 66.8
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.0e-199 699.5 546 67.0
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.8e-193 679.1 546 66.3
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-192 675.6 425 86.1
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.9e-190 669.1 548 64.4
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 6.4e-190 667.9 548 65.7
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 8.4e-190 667.5 547 64.7
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 8.4e-190 667.5 547 64.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.9e-189 666.4 545 65.1
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.4e-189 666.0 551 63.7
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.1e-188 662.9 545 64.4
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 3.9e-187 658.7 548 63.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.5e-186 656.8 545 63.5
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.3e-185 653.7 549 64.1
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.1e-185 652.9 544 64.0
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 6.2e-185 651.4 544 64.0
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 9.0e-184 647.5 546 63.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.2e-183 647.1 544 63.1
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.2e-183 647.1 544 64.0
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.2e-183 647.1 547 61.8
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.5e-183 646.7 547 61.2
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 9.9e-183 644.0 524 64.3
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.4e-181 639.4 544 61.8
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 3.2e-181 639.0 525 63.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.4e-181 638.3 553 61.1
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 9.3e-181 637.5 538 62.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 9.3e-181 637.5 525 63.8
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 2.7e-180 636.0 553 60.9
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 3.5e-180 635.6 543 61.3
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 4.6e-180 635.2 545 63.5
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 6.7e-179 631.3 543 61.5
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 8.7e-179 630.9 544 62.3
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.5e-178 629.4 547 61.8
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.7e-177 625.5 545 61.3
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 6.9e-176 621.3 545 60.6
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 6.9e-176 621.3 545 60.6
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 6.9e-176 621.3 545 60.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.0e-175 619.8 544 60.1
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.4e-175 619.0 548 60.4
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.2e-174 616.3 546 59.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.8e-174 615.5 538 59.9
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 7.1e-173 611.3 545 59.3
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.5e-172 609.0 542 59.0
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 3.5e-172 609.0 547 59.6
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.6e-172 608.6 511 62.2
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 3.0e-171 605.9 545 58.7
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 8.7e-171 604.4 424 78.5
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-169 600.5 525 61.1
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.8e-169 599.4 544 57.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.7e-169 599.0 525 60.8
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 6.2e-169 598.2 549 56.6
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.2e-169 597.8 525 60.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.4e-168 596.3 537 58.8
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 3.1e-168 595.9 549 59.6
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-168 594.3 525 60.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-168 594.3 525 60.2
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.2e-167 594.0 546 59.2
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.0e-167 593.2 549 56.8
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 2.6e-167 592.8 532 60.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.3e-166 590.5 552 59.2
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.3e-166 590.5 531 59.5
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.7e-166 590.1 545 58.9
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.7e-166 590.1 545 58.9
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 5.0e-166 588.6 545 58.7
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.4e-165 587.0 532 59.6
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 4.2e-165 585.5 549 55.6
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.5e-165 585.1 549 55.7
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.5e-165 585.1 539 59.2
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.2e-164 583.9 550 57.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.8e-163 580.1 549 55.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.3e-163 579.7 525 58.9
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 3.9e-163 578.9 550 55.1
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.5e-162 576.2 550 55.1
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.5e-162 576.2 550 56.9
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 4.3e-162 575.5 550 54.9
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.3e-160 568.5 551 55.2
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.7e-158 563.5 539 56.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 3.8e-158 562.4 537 57.2
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.2e-157 558.1 519 59.0
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 2.7e-156 556.2 529 56.5
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-156 555.8 549 53.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 7.9e-156 554.7 550 53.3
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-149 534.3 545 54.7
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.9e-149 533.5 545 55.0
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 4.2e-149 532.3 542 52.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.7e-148 529.6 546 54.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.1e-144 515.8 421 63.7
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.3e-139 500.0 326 81.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 8.0e-132 474.9 428 59.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 5.2e-131 472.2 425 59.5
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 2.2e-126 456.8 414 57.7
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.9e-119 432.2 550 47.1
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 9.5e-117 424.9 546 46.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 5.7e-114 415.6 493 49.1
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.4e-112 411.0 574 40.4
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 7.8e-111 405.2 362 58.6
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 4.4e-106 389.4 475 47.8
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.0e-103 379.0 204 95.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 6.6e-102 375.6 229 87.3
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 8.9e-99 365.2 548 43.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 4.9e-97 359.4 501 41.5
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.9e-96 357.5 357 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 6.2e-92 342.4 533 39.6
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 4.6e-87 326.2 519 38.0
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 7.3e-85 318.9 266 60.2
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.2e-82 311.6 492 38.0
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.5e-82 311.2 497 40.8
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 3.4e-82 310.1 497 40.6
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.4e-82 310.1 321 55.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.5e-77 293.9 270 60.0
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.1e-71 274.2 351 48.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.3e-54 218.4 241 48.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 2.5e-40 171.0 118 76.3
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.5e-37 161.8 156 60.3
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.6e-34 151.0 78 96.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.1e-32 145.6 110 70.0
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.1e-32 145.6 583 25.4
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.4e-30 138.7 202 45.5
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-29 135.2 117 57.3
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.3e-28 129.8 104 62.5
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 8.2e-28 129.4 511 26.8
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-27 129.0 91 64.8
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.6e-26 124.4 455 27.5
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 7.7e-26 122.9 90 71.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-24 118.2 114 53.5
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-24 117.9 103 58.3
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 8.0e-23 112.8 96 59.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.3e-20 105.5 488 23.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 7.2e-16 89.7 164 37.2
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 9.8e-13 79.3 86 44.2
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 3.8e-09 67.4 122 36.9
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 8.5e-09 66.2 74 50.0
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.5e-08 65.5 522 24.1
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.7e-07 61.2 473 21.1
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.0e-07 59.7 62 48.4


User provided reference genes

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