Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1618.2 803 100.0
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1521.9 803 95.1
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1330.1 805 82.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1305.0 803 80.3
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1304.7 804 80.7
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1297.3 803 80.3
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1289.2 814 79.1
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1258.0 803 78.3
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1241.9 803 78.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 0.0e+00 1233.0 803 77.2
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1182.5 802 73.7
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1182.5 802 73.7
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1143.6 803 71.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1143.3 803 71.0
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1141.7 804 71.3
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1124.0 803 69.9
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1123.2 804 70.6
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1117.1 805 70.3
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1116.7 803 69.4
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1110.5 803 69.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1108.2 804 69.0
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1106.3 799 70.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1103.2 803 68.2
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1102.8 804 69.5
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1102.4 808 68.7
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1093.2 821 69.1
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1090.9 803 68.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1089.3 803 68.5
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1088.6 803 67.9
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1082.4 803 67.7
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1081.2 804 67.9
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1080.5 803 68.2
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 5.5e-312 1073.5 814 67.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 2.7e-311 1071.6 803 67.4
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 6.6e-311 1070.5 804 67.9
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 8.2e-311 1070.1 775 69.8
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 6.2e-306 1053.9 806 64.9
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.4e-305 1052.7 906 61.4
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 9.9e-304 1046.6 895 61.0
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 2.2e-303 1045.4 797 65.0
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 2.5e-299 1031.9 803 65.5
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 7.4e-299 1030.4 803 65.5
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 1.6e-298 1029.2 802 63.2
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.8e-297 1025.8 803 65.0
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.0e-297 1023.5 803 65.0
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.2e-296 1023.1 804 63.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 3.4e-296 1021.5 805 63.4
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 3.4e-296 1021.5 808 62.7
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 9.9e-296 1020.0 806 63.3
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.3e-295 1019.6 803 64.9
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.3e-295 1019.6 805 63.6
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 2.2e-295 1018.8 806 63.3
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 3.8e-295 1018.1 803 62.8
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 8.4e-295 1016.9 801 63.3
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.1e-294 1016.5 812 62.1
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.4e-294 1016.1 807 62.3
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.9e-294 1015.8 798 63.2
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.2e-294 1015.0 804 62.4
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.6e-293 1012.7 804 62.4
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 3.5e-293 1011.5 804 62.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.3e-292 1009.6 804 62.3
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.8e-292 1009.2 806 63.3
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.0e-292 1008.4 797 62.0
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 7.4e-291 1003.8 808 63.9
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.4e-289 998.8 807 63.1
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 3.1e-289 998.4 811 63.4
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.8e-288 994.2 866 59.7
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.7e-287 992.6 805 62.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.2e-287 992.3 829 60.6
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 1.9e-286 989.2 805 62.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.1e-283 979.9 802 60.7
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.9e-283 979.2 807 62.3
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 7.4e-283 977.2 797 63.4
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 3.7e-282 974.9 747 66.5
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 4.8e-282 974.5 766 65.4
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 4.5e-280 968.0 807 62.2
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 4.5e-280 968.0 804 60.2
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.1e-278 963.4 905 56.5
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.4e-273 945.7 802 58.6
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 2.4e-273 945.7 803 60.6
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.3e-263 913.3 771 58.5
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 3.6e-261 905.2 809 57.4
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 7.4e-259 897.5 795 58.5
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.1e-254 883.6 565 79.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 5.2e-252 874.8 807 55.6
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.2e-248 863.6 821 55.5
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 4.8e-242 841.6 802 55.9
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 2.2e-210 736.5 797 49.2
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 2.1e-208 729.9 498 70.5
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 6.6e-207 724.9 557 67.1
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 4.2e-185 652.5 479 67.8
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.4e-180 636.7 424 71.7
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 2.0e-179 633.6 800 45.6
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 6.4e-178 628.6 622 54.5
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.3e-154 551.2 824 39.7
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.5e-146 521.9 399 66.4
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 8.5e-146 521.9 816 38.5
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 1.1e-145 521.5 536 50.9
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 7.2e-137 492.3 291 88.0
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.1e-132 476.5 533 50.8
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.5e-110 404.8 832 32.7
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.4e-108 398.3 773 33.8
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 8.9e-103 379.0 443 49.4
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 8.6e-98 362.5 448 46.4
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 8.6e-98 362.5 190 86.3
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.5e-89 334.3 404 44.6
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.4e-87 327.8 256 64.8
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.7e-85 321.6 381 47.5
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-78 298.1 182 78.6
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 6.9e-71 273.1 226 59.3
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.6e-59 235.3 421 36.1
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 7.9e-51 206.5 430 32.8
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 9.7e-49 199.5 174 63.2
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 8.8e-42 176.4 463 28.7
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 1.5e-41 175.6 222 43.2
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 8.2e-40 169.9 349 35.2
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 5.9e-38 163.7 255 38.0
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.1e-33 149.4 109 62.4
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 3.7e-32 144.4 487 26.7
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 8.2e-32 143.3 511 25.0
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 7.0e-31 140.2 164 48.8
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.7e-29 135.6 109 59.6
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.9e-28 132.1 81 74.1
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 2.5e-28 131.7 109 58.7
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 4.2e-28 131.0 86 73.3
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.4e-28 129.8 81 74.1
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.6e-27 127.9 79 77.2
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 3.6e-27 127.9 86 67.4
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 4.7e-27 127.5 84 72.6
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.4e-26 125.9 68 79.4
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.0e-26 124.8 89 65.2
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.8e-26 123.2 105 57.1
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.7e-25 120.6 81 69.1
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-24 118.6 84 66.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.2e-24 118.6 153 44.4
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.5e-22 110.9 61 80.3
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 5.0e-21 107.5 61 77.0
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 4.2e-20 104.4 61 75.4
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 8.8e-18 96.7 61 75.4
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-17 95.9 57 80.7
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.0e-17 95.5 55 80.0
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.6e-14 85.9 66 63.6
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.5e-14 84.3 65 63.1
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 5.9e-14 84.0 80 52.5
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.3e-13 82.8 54 66.7
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-13 82.8 78 47.4
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.0e-13 80.9 81 51.9
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.0e-13 80.9 55 65.5
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-12 79.0 55 63.6
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-11 75.5 61 57.4
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.1e-11 73.9 60 61.7
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 2.8e-08 65.1 46 65.2
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.4e-07 62.0 81 43.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 2.7e-06 58.5 32 75.0
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 3.5e-06 58.2 59 39.0


User provided reference genes

Program Settings