Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9FLE0S Arachis hypogaea HOM05D001373 ORTHO05D001330 4.1e-84 314.7 161 100.0
arahy.Tifrunner.gnm1.ann1.DMB65R Arachis hypogaea HOM05D001373 ORTHO05D001330 3.9e-58 228.4 152 82.2
arahy.Tifrunner.gnm1.ann1.MWJV02 Arachis hypogaea HOM05D001373 ORTHO05D001330 6.6e-58 227.6 152 81.6
TPR.G18692 Trifolium pratense HOM05D001373 ORTHO05D001330 9.0e-47 190.7 152 68.4
Phvul.007G103300 Phaseolus vulgaris HOM05D001373 ORTHO05D001330 2.6e-46 189.1 152 66.4
Glyma.10G203700 Glycine max HOM05D001373 ORTHO05D001330 3.4e-46 188.7 152 67.8
Lalb_Chr06g0170201 Lupinus albus HOM05D001373 ORTHO05D001330 3.4e-46 188.7 152 67.8
Medtr1g092880 Medicago truncatula HOM05D001373 ORTHO05D001330 9.9e-46 187.2 152 68.4
Lj5g0003680 Lotus japonicus HOM05D001373 ORTHO05D001330 2.4e-44 182.6 152 67.8
Psat6g177600 Pisum sativum HOM05D001373 ORTHO05D001330 3.2e-44 182.2 152 65.8
VMungo0720G0665 Vigna mungo HOM05D001373 ORTHO05D001330 1.2e-43 180.3 151 65.6
Medtr1g092870 Medicago truncatula HOM05D001373 ORTHO05D001330 1.6e-43 179.9 152 65.1
Glyma.10G203600 Glycine max HOM05D001373 ORTHO05D001330 3.0e-42 175.6 152 63.8
Cfa011258 Carpinus fangiana HOM05D001373 ORTHO05D001330 1.5e-41 173.3 152 60.5
Haze_02525 Corylus avellana HOM05D001373 ORTHO05D001330 3.3e-41 172.2 152 58.6
Atru.chr12.1002 Acer truncatum HOM05D001373 ORTHO05D001330 7.4e-41 171.0 152 61.2
CiPaw.14G032600 Carya illinoinensis HOM05D001373 ORTHO05D001330 8.2e-40 167.5 150 58.7
Atru.chr12.1004 Acer truncatum HOM05D001373 ORTHO05D001330 1.8e-39 166.4 152 58.6
Ciclev10031562m.g Citrus clementina HOM05D001373 ORTHO05D001330 3.1e-39 165.6 152 61.2
Actinidia34717 Actinidia chinensis HOM05D001373 ORTHO05D001330 5.3e-39 164.9 153 59.5
QL04p044735 Quercus lobata HOM05D001373 ORTHO05D001330 9.0e-39 164.1 150 57.3
CiPaw.13G038300 Carya illinoinensis HOM05D001373 ORTHO05D001330 2.0e-38 162.9 152 57.9
Cpa.g.sc183.3 Carica papaya HOM05D001373 ORTHO05D001330 3.4e-38 162.2 152 59.2
QL04p044773 Quercus lobata HOM05D001373 ORTHO05D001330 1.0e-37 160.6 150 56.7
Thecc.10G107800 Theobroma cacao HOM05D001373 ORTHO05D001330 1.3e-37 160.2 152 57.2
TWI63G1122 Tripterygium wilfordii HOM05D001373 ORTHO05D001330 1.3e-37 160.2 152 58.6
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 2.9e-37 159.1 82 95.1
CSS0015733 Camellia sinensis var. sinensis HOM05D001373 ORTHO05D001330 2.9e-37 159.1 153 55.6
EL10Ac6g14545 Beta vulgaris HOM05D001373 ORTHO05D001330 1.4e-36 156.8 152 58.6
CANSAT56G3177 Cannabis sativa HOM05D001373 ORTHO05D001330 2.5e-36 156.0 152 55.3
AUR62002955 Chenopodium quinoa HOM05D001373 ORTHO05D001330 2.5e-36 156.0 153 56.9
Prupe.2G079900 Prunus persica HOM05D001373 ORTHO05D001330 3.2e-36 155.6 153 58.2
GSVIVG01011268001 Vitis vinifera HOM05D001373 ORTHO05D001330 7.1e-36 154.5 154 55.8
Eucgr.G02698 Eucalyptus grandis HOM05D001373 ORTHO05D001330 9.3e-36 154.1 152 57.2
Aqoxy4G02811 Aquilegia oxysepala HOM05D001373 ORTHO05D001330 1.2e-35 153.7 152 55.3
ClCG08G008190 Citrullus lanatus HOM05D001373 ORTHO05D001330 2.1e-35 152.9 152 53.3
Sc09g0005480 Simmondsia chinensis HOM05D001373 ORTHO05D001330 2.1e-35 152.9 151 57.6
COL.COLO4_37500 Corchorus olitorius HOM05D001373 ORTHO05D001330 3.5e-35 152.1 152 54.6
Nn6g34953 Nelumbo nucifera HOM05D001373 ORTHO05D001330 4.6e-35 151.8 153 53.6
RcHm_v2.0_Chr1g0332771 Rosa chinensis HOM05D001373 ORTHO05D001330 6.0e-35 151.4 151 55.6
Sed0004312 Sechium edule HOM05D001373 ORTHO05D001330 6.0e-35 151.4 152 52.6
AUR62007760 Chenopodium quinoa HOM05D001373 ORTHO05D001330 2.3e-34 149.4 154 55.8
Hma1.2p1_0356F.1_g133990 Hydrangea macrophylla HOM05D001373 ORTHO05D001330 2.3e-34 149.4 152 55.9
Lsat_1_v5_gn_0_7541 Lactuca sativa HOM05D001373 ORTHO05D001330 5.1e-34 148.3 152 53.3
Ah.02g127310 Amaranthus hybridus HOM05D001373 ORTHO05D001330 8.7e-34 147.5 152 55.9
PSO339G2300 Papaver somniferum HOM05D001373 ORTHO05D001330 1.1e-33 147.1 151 54.3
PGR142G2723 Punica granatum HOM05D001373 ORTHO05D001330 2.5e-33 146.0 152 51.3
MELO3C030268.2 Cucumis melo HOM05D001373 ORTHO05D001330 5.7e-33 144.8 152 52.6
CsaV3_6G004160 Cucumis sativus L. HOM05D001373 ORTHO05D001330 9.7e-33 144.1 150 51.3
ECA232G4280 Erigeron canadensis HOM05D001373 ORTHO05D001330 9.7e-33 144.1 151 52.3
HanXRQChr05g0146901 Helianthus annuus HOM05D001373 ORTHO05D001330 9.7e-33 144.1 152 51.3
Manes.10G058000 Manihot esculenta HOM05D001373 ORTHO05D001330 9.7e-33 144.1 150 54.0
PSO384G1565 Papaver somniferum HOM05D001373 ORTHO05D001330 9.7e-33 144.1 151 53.6
EL10Ac6g14544 Beta vulgaris HOM05D001373 ORTHO05D001330 1.3e-32 143.7 152 52.6
QL04p077975 Quercus lobata HOM05D001373 ORTHO05D001330 1.6e-32 143.3 150 52.7
Hund06776 Selenicereus undatus HOM05D001373 ORTHO05D001330 1.6e-32 143.3 150 54.0
Sc04g0009080 Simmondsia chinensis HOM05D001373 ORTHO05D001330 4.8e-32 141.7 151 53.0
FAN03G2160 Fragaria x ananassa HOM05D001373 ORTHO05D001330 1.1e-31 140.6 141 56.0
SGA_v2.0_scaffold13G06487 Striga asiatica HOM05D001373 ORTHO05D001330 1.1e-31 140.6 153 52.3
Potri.008G022100 Populus trichocarpa HOM05D001373 ORTHO05D001330 1.8e-31 139.8 152 51.3
MSTRG.9091 Avicennia marina HOM05D001373 ORTHO05D001330 2.4e-31 139.4 153 52.3
Peaxi162Scf00173g00074 Petunia axillaris HOM05D001373 ORTHO05D001330 2.4e-31 139.4 152 53.3
Nitab4.5_0003774g0040 Nicotiana tabacum HOM05D001373 ORTHO05D001330 9.0e-31 137.5 152 53.3
Migut.F00904 Erythranthe guttata HOM05D001373 ORTHO05D001330 1.5e-30 136.7 153 50.3
Cc00_g18840 Coffea canephora HOM05D001373 ORTHO05D001330 2.0e-30 136.3 152 51.3
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 2.0e-30 136.3 152 51.3
CAN.G730.35 Capsicum annuum HOM05D001373 ORTHO05D001330 2.6e-30 136.0 148 53.4
Peaxi162Scf00173g00824 Petunia axillaris HOM05D001373 ORTHO05D001330 2.6e-30 136.0 154 51.9
Potri.010G237300 Populus trichocarpa HOM05D001373 ORTHO05D001330 3.4e-30 135.6 152 51.3
PGSC0003DMG400019465 Solanum tuberosum HOM05D001373 ORTHO05D001330 3.4e-30 135.6 153 51.6
Sopen11g003050 Solanum pennellii HOM05D001373 ORTHO05D001330 4.5e-30 135.2 153 51.6
Eucgr.J00999 Eucalyptus grandis HOM05D001373 ORTHO05D001330 1.0e-29 134.0 151 49.7
Cc00_g18820 Coffea canephora HOM05D001373 ORTHO05D001330 1.3e-29 133.7 152 50.0
Solyc11g007130.2 Solanum lycopersicum HOM05D001373 ORTHO05D001330 1.7e-29 133.3 153 51.0
Oeu026574.1 Olea europaea HOM05D001373 ORTHO05D001330 2.9e-29 132.5 153 48.4
FAN01G2854 Fragaria x ananassa HOM05D001373 ORTHO05D001330 5.0e-29 131.7 141 52.5
FAN10G3078 Fragaria x ananassa HOM05D001373 ORTHO05D001330 5.0e-29 131.7 141 52.5
QL04p043569 Quercus lobata HOM05D001373 ORTHO05D001330 6.5e-29 131.3 133 53.4
FvH4_7g05740 Fragaria vesca HOM05D001373 ORTHO05D001330 1.9e-28 129.8 141 51.8
Lj3A929G30 Lonicera japonica HOM05D001373 ORTHO05D001330 1.9e-28 129.8 159 50.9
Eucgr.J00997 Eucalyptus grandis HOM05D001373 ORTHO05D001330 2.5e-28 129.4 151 48.3
FAN06G0236 Fragaria x ananassa HOM05D001373 ORTHO05D001330 2.5e-28 129.4 141 51.8
PGR044G1873 Punica granatum HOM05D001373 ORTHO05D001330 2.5e-28 129.4 152 48.7
Oeu061779.1 Olea europaea HOM05D001373 ORTHO05D001330 3.2e-28 129.0 149 49.7
Sopen11g003060 Solanum pennellii HOM05D001373 ORTHO05D001330 1.6e-27 126.7 150 48.7
EL10Ac6g14542 Beta vulgaris HOM05D001373 ORTHO05D001330 3.6e-27 125.6 152 49.3
Sabra08G0015000 Salix brachista HOM05D001373 ORTHO05D001330 7.9e-27 124.4 152 49.3
unitig_899.g14475 Utricularia gibba HOM05D001373 ORTHO05D001330 2.3e-26 122.9 150 51.3
Dinv09593 Davidia involucrata HOM05D001373 ORTHO05D001330 8.8e-26 120.9 155 46.5
ATR0820G229 Amborella trichopoda HOM05D001373 ORTHO05D001330 3.3e-25 119.0 153 44.4
PGSC0003DMG400019466 Solanum tuberosum HOM05D001373 ORTHO05D001330 4.8e-24 115.2 141 47.5
Solyc11g007140.2 Solanum lycopersicum HOM05D001373 ORTHO05D001330 1.1e-23 114.0 141 46.8
CDE08G1249 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 2.4e-23 112.8 152 44.7
SGA_v2.0_scaffold68G22837 Striga asiatica HOM05D001373 ORTHO05D001330 4.1e-23 112.1 133 48.9
Rhsim09G0143000 Rhododendron simsii HOM05D001373 ORTHO05D001330 1.2e-22 110.5 161 41.6
Cc02_g09870 Coffea canephora HOM05D001373 ORTHO05D001330 1.5e-22 110.2 140 44.3
Actinidia31099 Actinidia chinensis HOM05D001373 ORTHO05D001330 3.4e-22 109.0 153 45.1
Cc02_g09850 Coffea canephora HOM05D001373 ORTHO05D001330 1.0e-21 107.5 140 42.9
DCAR_006344 Daucus carota HOM05D001373 ORTHO05D001330 5.0e-21 105.1 141 43.3
MBI17_g47109_MAGBIO Magnolia biondii HOM05D001373 ORTHO05D001330 8.5e-21 104.4 134 44.0
QL04p044754 Quercus lobata HOM05D001373 ORTHO05D001330 3.2e-20 102.4 82 58.5
MBI17_g46022_MAGBIO Magnolia biondii HOM05D001373 ORTHO05D001330 1.2e-19 100.5 130 43.8
Os11g0151500 Oryza sativa ssp. japonica HOM05D001373 ORTHO05D001330 1.2e-19 100.5 152 40.8
QL04p044761 Quercus lobata HOM05D001373 ORTHO05D001330 1.6e-19 100.1 82 59.8
CANSAT21G2570 Cannabis sativa HOM05D001373 ORTHO05D001330 2.1e-19 99.8 95 58.9
CDE06G1486 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 3.6e-19 99.0 107 50.5
EL10Ac6g13655 Beta vulgaris HOM05D001373 ORTHO05D001330 8.8e-18 94.4 149 36.2
SEGI_32913 Sequoiadendron giganteum HOM05D001373 ORTHO05D001330 7.4e-17 91.3 153 34.6
CANSAT01G1412 Cannabis sativa HOM05D001373 ORTHO05D001330 1.3e-16 90.5 86 51.2
AUR62014014 Chenopodium quinoa HOM05D001373 ORTHO05D001330 2.2e-16 89.7 150 35.3
AUR62005359 Chenopodium quinoa HOM05D001373 ORTHO05D001330 6.3e-16 88.2 149 35.6
Zm00001eb196970 Zea mays HOM05D001373 ORTHO05D001330 4.1e-15 85.5 114 43.9
SalBow6G4659 Salvia bowleyana HOM05D001373 ORTHO05D001330 5.3e-15 85.1 153 34.6
Nitab4.5_0001437g0220 Nicotiana tabacum HOM05D001373 ORTHO05D001330 3.4e-14 82.4 152 38.8
Hund05981 Selenicereus undatus HOM05D001373 ORTHO05D001330 5.9e-14 81.6 140 34.3
Peaxi162Scf00173g00820 Petunia axillaris HOM05D001373 ORTHO05D001330 6.5e-13 78.2 90 45.6
QL04p044744 Quercus lobata HOM05D001373 ORTHO05D001330 3.6e-11 72.4 50 70.0
SalBow6G0980 Salvia bowleyana HOM05D001373 ORTHO05D001330 1.1e-09 67.4 155 31.0
SalBow7G0285 Salvia bowleyana HOM05D001373 ORTHO05D001330 1.1e-09 67.4 161 28.6
DCAR_013896 Daucus carota HOM05D001373 ORTHO05D001330 2.6e-09 66.2 153 32.0
AagrBONN_evm.TU.Sc2ySwM_228.1029 Anthoceros agrestis HOM05D001373 ORTHO05D001330 4.4e-09 65.5 157 29.3
Lj4A16T132 Lonicera japonica HOM05D001373 ORTHO05D001330 4.4e-09 65.5 153 29.4
Glyma.20G186933 Glycine max HOM05D001373 ORTHO05D001330 7.4e-09 64.7 105 41.9
Migut.C00902 Erythranthe guttata HOM05D001373 ORTHO05D001330 6.3e-08 61.6 157 29.3
Zm00001eb250050 Zea mays HOM05D001373 ORTHO05D001330 6.3e-08 61.6 103 35.0
CSS0017725 Camellia sinensis var. sinensis HOM05D001373 ORTHO05D001330 8.2e-08 61.2 56 51.8
Psat6g234600 Pisum sativum HOM05D001373 ORTHO05D001330 1.4e-07 60.5 156 29.5
HPP92_022254 Vanilla planifolia HOM05D001373 ORTHO05D001330 1.4e-07 60.5 158 27.2
HPP92_022257 Vanilla planifolia HOM05D001373 ORTHO05D001330 1.4e-07 60.5 158 27.2
CSS0007262 Camellia sinensis var. sinensis HOM05D001373 ORTHO05D001330 1.8e-07 60.1 159 28.9
Lj5g0002157 Lotus japonicus HOM05D001373 ORTHO05D001330 1.8e-07 60.1 162 30.2
TAR625G0149 Trochodendron aralioides HOM05D001373 ORTHO05D001330 2.4e-07 59.7 165 28.5
Dinv39558 Davidia involucrata HOM05D001373 ORTHO05D001330 4.1e-07 58.9 161 27.3
Oeu029652.1 Olea europaea HOM05D001373 ORTHO05D001330 5.3e-07 58.5 161 28.6
TPR.G2457 Trifolium pratense HOM05D001373 ORTHO05D001330 5.3e-07 58.5 156 29.5
Hma1.2p1_2322F.1_g319840 Hydrangea macrophylla HOM05D001373 ORTHO05D001330 9.1e-07 57.8 158 28.5
VMungo0720G2606 Vigna mungo HOM05D001373 ORTHO05D001330 9.1e-07 57.8 160 29.4
A02p27030 Brassica napus HOM05D001373 ORTHO05D001330 1.2e-06 57.4 160 26.9
BolC2t10317H Brassica oleracea HOM05D001373 ORTHO05D001330 1.2e-06 57.4 160 26.9
BraA02t07720Z Brassica rapa HOM05D001373 ORTHO05D001330 1.2e-06 57.4 160 26.9
C02p42790 Brassica napus HOM05D001373 ORTHO05D001330 1.6e-06 57.0 160 26.9
Medtr1g112980 Medicago truncatula HOM05D001373 ORTHO05D001330 1.6e-06 57.0 145 31.0
TWI56G1260 Tripterygium wilfordii HOM05D001373 ORTHO05D001330 1.6e-06 57.0 167 29.3
TAR381G1201 Trochodendron aralioides HOM05D001373 ORTHO05D001330 1.6e-06 57.0 153 27.5
Actinidia29771 Actinidia chinensis HOM05D001373 ORTHO05D001330 2.0e-06 56.6 160 26.9
Glyma.10G283800 Glycine max HOM05D001373 ORTHO05D001330 2.0e-06 56.6 160 30.0
Glyma.20G105900 Glycine max HOM05D001373 ORTHO05D001330 2.0e-06 56.6 92 38.0
CDE09G0184 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 2.6e-06 56.2 160 28.8
Ca_03294_v3 Cicer arietinum L. HOM05D001373 ORTHO05D001330 2.6e-06 56.2 159 28.3
Dinv31896 Davidia involucrata HOM05D001373 ORTHO05D001330 3.5e-06 55.8 160 26.2
Atru.chr5.3449 Acer truncatum HOM05D001373 ORTHO05D001330 4.5e-06 55.5 160 26.2
Manes.18G009100 Manihot esculenta HOM05D001373 ORTHO05D001330 4.5e-06 55.5 158 30.4
BcaB02g11469 Brassica carinata HOM05D001373 ORTHO05D001330 5.9e-06 55.1 159 27.0
Ciclev10001166m.g Citrus clementina HOM05D001373 ORTHO05D001330 5.9e-06 55.1 152 28.3
Lalb_Chr23g0265961 Lupinus albus HOM05D001373 ORTHO05D001330 5.9e-06 55.1 162 29.0
Os02g0667500 Oryza sativa ssp. japonica HOM05D001373 ORTHO05D001330 5.9e-06 55.1 103 33.0
Phvul.007G017500 Phaseolus vulgaris HOM05D001373 ORTHO05D001330 5.9e-06 55.1 96 36.5
Sp7g08470 Schrenkiella parvula HOM05D001373 ORTHO05D001330 5.9e-06 55.1 160 26.2
arahy.Tifrunner.gnm1.ann1.G1TI3A Arachis hypogaea HOM05D001373 ORTHO05D001330 7.7e-06 54.7 158 29.1
Potri.005G245900 Populus trichocarpa HOM05D001373 ORTHO05D001330 7.7e-06 54.7 165 29.1
vmacro21849 Vaccinium macrocarpon HOM05D001373 ORTHO05D001330 7.7e-06 54.7 47 48.9


User provided reference genes

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