Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-180 636.3 325 100.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 4.8e-180 634.4 325 99.7
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.9e-145 518.8 324 78.7
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 6.1e-143 511.1 324 77.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.0e-142 510.4 324 78.1
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 9.1e-139 497.3 324 75.6
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 5.5e-136 488.0 324 74.4
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.4e-134 483.4 325 76.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 2.4e-131 472.6 324 71.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.2e-130 470.3 324 71.3
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 4.5e-130 468.4 324 71.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.7e-129 466.5 325 70.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 6.5e-129 464.5 326 70.2
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.5e-128 462.6 324 69.8
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 9.4e-128 460.7 325 71.4
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.1e-127 459.5 324 68.2
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.8e-126 456.4 325 68.9
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.5e-125 453.4 325 69.5
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.6e-125 452.6 326 69.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 3.3e-125 452.2 365 64.7
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 4.4e-125 451.8 324 65.7
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 5.7e-125 451.4 324 67.9
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 9.7e-125 450.7 325 69.5
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 9.7e-125 450.7 325 67.1
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.3e-124 450.3 325 69.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.7e-124 449.9 324 69.8
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.7e-124 449.9 327 68.8
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 2.2e-124 449.5 324 69.8
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.8e-124 449.1 325 68.9
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.1e-123 447.2 327 69.1
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.4e-123 446.0 331 68.3
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.6e-122 443.4 364 59.9
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.8e-121 438.7 339 65.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 6.5e-121 438.0 324 66.0
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 8.5e-121 437.6 328 66.5
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.1e-119 433.0 324 64.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.7e-119 432.6 326 66.9
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.0e-119 431.0 324 66.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.3e-118 429.5 326 64.7
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.8e-118 427.9 324 65.7
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.8e-118 427.9 325 65.2
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 8.8e-118 427.6 324 64.2
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.0e-117 426.4 325 64.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.6e-117 426.0 324 67.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 7.5e-117 424.5 325 61.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.7e-116 423.3 324 66.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-116 423.3 325 64.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-116 422.9 325 64.9
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.8e-116 422.5 324 63.9
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.8e-116 421.8 324 63.6
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.4e-115 420.2 324 63.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 7.0e-115 417.9 324 63.3
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 9.1e-115 417.5 325 66.5
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.0e-113 414.1 324 63.9
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 6.5e-113 411.4 338 59.8
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 8.5e-113 411.0 324 62.3
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 2.5e-112 409.5 380 54.7
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.2e-112 409.1 325 64.3
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.2e-112 408.7 307 65.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 5.5e-112 408.3 342 60.5
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 5.5e-112 408.3 324 63.6
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.4e-112 407.5 325 64.0
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.2e-111 407.1 329 62.0
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 2.1e-111 406.4 325 60.0
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.7e-111 405.2 325 63.7
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.8e-110 403.3 324 62.0
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-110 402.9 324 63.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.3e-110 402.9 307 64.5
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.2e-109 400.6 324 61.1
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.2e-109 400.6 324 61.7
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.7e-109 398.3 324 61.7
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 2.2e-108 396.4 393 53.4
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 2.8e-108 396.0 324 61.1
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 3.7e-108 395.6 325 62.5
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 3.7e-108 395.6 325 62.5
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 4.9e-108 395.2 324 58.3
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.8e-107 393.3 326 62.0
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.8e-107 393.3 324 58.3
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 9.2e-107 391.0 325 60.9
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.6e-106 390.2 334 59.9
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.5e-106 388.7 334 59.6
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.5e-106 388.7 326 61.7
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.3e-105 386.3 324 61.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.9e-105 386.0 309 61.5
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 5.0e-105 385.2 326 60.1
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.9e-104 383.3 326 59.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.2e-103 380.6 350 55.7
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.1e-103 379.8 309 61.8
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.4e-102 377.1 369 54.7
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.0e-102 375.9 360 55.6
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 4.4e-101 372.1 327 58.1
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.7e-101 371.7 315 59.0
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.2e-100 369.8 326 57.4
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.9e-100 369.4 328 60.7
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.5e-98 362.5 328 55.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.3e-97 359.8 362 52.5
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.9e-96 356.7 326 55.5
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.2e-95 354.0 324 57.7
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.1e-95 353.2 284 62.3
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.2e-95 351.7 327 56.0
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 8.0e-95 351.3 327 55.4
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 2.6e-93 346.3 327 54.4
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 6.4e-92 341.7 324 57.1
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.3e-92 341.3 285 61.4
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.2e-90 337.4 252 65.1
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.7e-90 336.3 302 60.3
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.0e-89 334.3 216 73.1
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 2.3e-89 333.2 362 48.3
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 5.0e-89 332.0 324 50.3
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 1.9e-88 330.1 325 52.9
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.9e-88 330.1 329 50.8
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.5e-88 329.7 346 49.1
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 6.2e-87 325.1 325 50.5
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.1e-86 324.3 269 60.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.7e-82 309.7 235 63.8
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.4e-76 288.1 326 52.1
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-74 283.9 327 50.8
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 6.6e-73 278.5 308 48.7
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.7e-71 272.3 261 53.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 4.0e-70 269.2 210 66.7
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.9e-70 268.1 294 51.7
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.4e-69 266.2 324 44.4
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.9e-68 263.1 324 46.9
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 8.4e-68 261.5 171 73.1
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 4.2e-67 259.2 290 51.7
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.2e-66 257.7 211 62.1
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.3e-65 253.4 247 49.4
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.7e-57 225.3 145 75.9
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.0e-54 216.1 174 58.6
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.6e-50 204.1 145 70.3
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 5.6e-48 195.7 165 61.2
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-47 194.1 248 46.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.1e-47 193.7 164 62.2
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.1e-47 193.7 164 59.8
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 9.3e-43 178.3 301 37.5
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.2e-42 177.9 309 35.9
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.6e-42 176.0 151 56.3
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 6.7e-41 172.2 128 64.1
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.8e-39 166.0 152 57.2
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 9.3e-35 151.8 122 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 4.3e-32 142.9 219 35.2
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.3e-30 136.0 309 30.4
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.6e-29 133.7 120 58.3
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 3.8e-28 129.8 120 52.5
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 6.5e-28 129.0 215 32.1
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.4e-27 127.9 84 72.6
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 7.2e-27 125.6 111 57.7
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.7e-23 113.2 61 100.0
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.7e-21 105.5 86 62.8
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.8e-20 103.2 120 48.3
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 6.5e-20 102.4 76 65.8
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.4e-19 101.3 76 65.8
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.4e-19 101.3 76 65.8
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.0e-17 95.1 96 58.3
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.8e-15 87.0 66 63.6
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 8.2e-15 85.5 79 54.4
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 2.4e-14 84.0 61 72.1
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 5.0e-12 76.3 59 69.5
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 6.1e-10 69.3 40 85.0
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 8.8e-09 65.5 54 64.8


User provided reference genes

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