Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.4e-162 574.7 318 100.0
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.0e-151 539.3 318 94.7
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.5e-149 533.1 318 93.7
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.2e-146 523.5 318 92.5
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 2.0e-135 486.1 315 85.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.8e-131 473.0 302 85.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 6.8e-131 471.1 318 78.3
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 9.8e-130 467.2 304 84.9
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 6.4e-129 464.5 306 80.4
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.9e-128 463.0 315 82.9
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.0e-126 457.2 315 77.8
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 3.1e-123 445.7 319 79.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.4e-122 442.2 315 80.3
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 3.7e-121 438.7 301 80.7
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.4e-120 436.8 307 75.2
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.1e-120 435.3 307 74.9
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 2.7e-119 432.6 307 74.9
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 4.6e-119 431.8 315 75.6
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.9e-117 426.4 305 74.1
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.5e-117 426.0 309 72.5
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 9.5e-117 424.1 316 72.2
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.6e-116 423.3 316 72.5
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.8e-116 422.5 309 72.8
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 4.7e-116 421.8 309 71.8
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 6.2e-116 421.4 316 75.3
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 6.2e-116 421.4 302 76.8
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 6.2e-116 421.4 305 72.1
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.1e-115 420.6 307 75.9
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.4e-115 420.2 316 70.9
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.8e-115 419.9 312 71.5
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.4e-115 419.5 309 71.8
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 4.0e-115 418.7 309 70.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.0e-114 416.4 309 70.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 5.8e-114 414.8 318 73.6
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 7.6e-114 414.5 314 74.8
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 9.9e-114 414.1 311 70.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.7e-113 413.3 312 70.5
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 2.9e-113 412.5 309 73.8
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 6.4e-113 411.4 310 70.6
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 8.4e-113 411.0 308 71.1
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.4e-112 409.5 311 70.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.4e-112 409.5 311 70.1
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 3.2e-112 409.1 309 70.2
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 7.8e-111 404.4 303 74.3
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.0e-110 404.1 313 72.8
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.3e-110 403.7 298 72.1
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.9e-110 402.1 314 68.5
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.9e-110 402.1 305 69.5
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 5.1e-110 401.7 302 75.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.9e-109 399.8 307 68.4
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.5e-109 399.4 305 68.2
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 4.3e-109 398.7 305 73.1
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 5.6e-109 398.3 304 71.7
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.3e-109 397.9 307 67.8
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.8e-108 396.0 305 69.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.6e-108 395.6 305 69.5
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.7e-108 395.2 314 70.4
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.1e-107 394.0 322 68.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.4e-107 393.7 307 68.1
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.1e-107 392.5 314 70.1
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 3.1e-107 392.5 298 71.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-107 392.1 307 69.4
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.2e-107 391.7 307 68.7
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 5.2e-107 391.7 305 69.2
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 6.9e-107 391.3 305 68.2
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 6.9e-107 391.3 308 71.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 9.0e-107 391.0 309 73.1
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 9.0e-107 391.0 305 69.2
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.5e-106 390.2 305 72.1
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.5e-106 390.2 304 70.7
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.5e-106 390.2 296 74.7
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.5e-106 390.2 302 73.2
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 2.0e-106 389.8 307 68.7
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.4e-106 389.0 305 69.5
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 6.4e-105 384.8 305 70.8
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 6.4e-105 384.8 307 72.6
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.4e-105 384.8 304 68.1
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-104 384.0 305 70.5
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.4e-104 383.6 302 70.5
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.4e-104 383.6 309 72.2
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.4e-104 383.6 307 69.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.4e-104 383.6 305 68.2
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.2e-104 382.5 305 70.8
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.2e-104 382.5 305 70.8
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.2e-104 382.1 309 71.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 5.4e-104 381.7 304 70.1
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 5.4e-104 381.7 326 66.0
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 7.1e-104 381.3 305 70.5
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 9.3e-104 380.9 300 68.7
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.0e-102 377.5 313 69.6
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-102 377.1 316 70.3
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-102 377.1 298 73.5
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-102 376.7 316 70.6
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 3.0e-102 375.9 302 70.9
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.1e-102 375.2 309 65.4
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 6.6e-102 374.8 314 68.2
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 6.6e-102 374.8 314 68.5
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 5.6e-101 371.7 304 67.1
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.1e-100 369.8 307 70.7
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 4.8e-100 368.6 311 64.6
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.8e-100 368.6 319 64.3
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 6.2e-100 368.2 305 69.5
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 8.1e-100 367.9 314 66.9
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.5e-98 363.6 309 65.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 5.8e-98 361.7 314 66.2
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 9.9e-98 360.9 304 65.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.9e-96 356.7 293 71.3
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 2.1e-95 353.2 300 69.0
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.1e-95 353.2 291 66.7
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 2.1e-95 353.2 312 66.3
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-94 350.5 314 65.6
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.1e-93 347.4 306 67.6
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 4.0e-91 339.0 309 62.1
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.3e-89 334.0 244 70.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 8.2e-84 314.7 303 62.0
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.4e-83 313.9 240 68.3
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 5.8e-82 308.5 309 58.6
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.0e-81 307.8 313 57.2
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.4e-72 277.3 217 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.5e-69 267.3 301 57.8
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.3e-69 266.2 232 66.8
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 7.4e-69 265.0 302 57.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.9e-65 253.1 197 70.6
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.4e-62 244.2 290 55.2
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.0e-62 243.0 218 67.0
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 4.8e-60 235.7 242 60.7
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.2e-57 226.9 285 48.4
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 5.5e-56 222.2 294 53.4
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.3e-49 201.1 128 82.0
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 6.7e-46 188.7 259 49.8
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 8.8e-46 188.3 335 42.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.8e-41 172.9 299 43.1
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 8.5e-41 171.8 126 69.0
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.6e-39 167.5 294 36.1
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.8e-38 164.1 320 37.2
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 6.6e-33 145.6 94 79.8
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.5e-32 143.7 129 62.0
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 7.5e-29 132.1 89 75.3
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 5.4e-27 125.9 201 37.8
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.0e-25 121.7 91 68.1
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.6e-23 113.2 82 74.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 3.6e-23 113.2 128 50.0
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 8.9e-22 108.6 206 35.4
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.0e-21 107.5 164 42.7
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 9.8e-21 105.1 71 77.5
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-18 97.8 168 42.9
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-18 97.8 168 42.9
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.6e-18 97.8 168 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.0e-17 93.6 175 42.3
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 9.5e-16 88.6 65 70.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-15 88.2 84 60.7
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-15 87.8 72 65.3
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-14 84.3 72 62.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 3.7e-12 76.6 80 52.5
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.4e-11 74.7 112 42.9
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 3.0e-09 67.0 40 80.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.9e-08 64.3 88 40.9


User provided reference genes

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