Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.6e-222 775.8 400 100.0
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.3e-219 766.1 400 99.2
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 2.6e-180 635.6 398 82.9
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 5.0e-179 631.3 409 81.9
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 6.1e-177 624.4 401 82.3
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 7.4e-175 617.5 402 80.3
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 1.8e-173 612.8 396 79.8
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 2.9e-171 605.5 411 78.1
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.1e-170 603.6 404 78.2
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.4e-170 603.2 410 76.6
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 2.5e-170 602.4 406 76.1
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.5e-170 602.4 409 77.5
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 3.2e-170 602.1 404 78.0
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.6e-169 599.7 399 78.2
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 7.9e-169 597.4 381 81.1
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.8e-168 596.3 406 75.1
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.8e-168 596.3 399 76.4
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 5.1e-168 594.7 405 77.3
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 8.8e-168 594.0 406 77.1
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 8.8e-168 594.0 399 77.4
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 8.8e-168 594.0 406 75.1
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.5e-167 593.2 355 84.5
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.3e-167 591.7 402 77.4
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 4.3e-167 591.7 405 75.3
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 7.4e-167 590.9 408 75.7
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.2e-166 589.3 398 76.9
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 8.2e-166 587.4 398 76.6
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-165 587.0 402 76.9
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.1e-165 587.0 398 76.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.4e-165 585.9 405 76.3
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.1e-165 585.5 398 76.6
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.9e-165 584.3 403 75.9
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.9e-165 584.3 398 76.4
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.2e-164 583.6 405 75.3
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 4.5e-164 581.6 403 74.7
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 4.5e-164 581.6 408 75.7
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 4.5e-164 581.6 346 83.2
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 5.9e-164 581.3 396 75.3
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.7e-164 580.9 403 75.7
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.7e-163 579.7 404 74.3
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.2e-163 579.3 393 77.4
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.8e-163 578.6 402 75.9
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.0e-163 578.2 402 75.6
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 2.5e-162 575.9 404 74.0
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 2.5e-162 575.9 404 74.0
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 3.2e-162 575.5 415 73.0
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 3.2e-162 575.5 357 81.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.2e-162 575.1 403 75.2
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 9.4e-162 573.9 409 73.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 2.1e-161 572.8 390 76.2
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 3.0e-160 568.9 406 71.7
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 3.9e-160 568.5 362 77.9
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 6.7e-160 567.8 410 73.7
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 8.8e-160 567.4 417 71.7
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 2.0e-159 566.2 405 72.3
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 3.3e-159 565.5 417 71.5
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 3.3e-159 565.5 414 72.2
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 3.3e-159 565.5 413 72.9
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 5.7e-159 564.7 414 71.0
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 5.7e-159 564.7 361 77.0
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.3e-158 563.5 417 71.7
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 2.2e-158 562.8 391 73.7
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 2.8e-158 562.4 404 71.8
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 3.7e-158 562.0 417 71.5
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 6.3e-158 561.2 414 72.0
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 6.3e-158 561.2 430 69.3
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 2.4e-157 559.3 366 78.4
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 3.1e-157 558.9 407 72.0
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 4.1e-157 558.5 347 80.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 5.3e-157 558.1 405 71.1
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 9.1e-157 557.4 436 69.0
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 9.1e-157 557.4 402 70.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.5e-156 556.6 397 72.8
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 2.6e-156 555.8 402 70.6
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 4.5e-156 555.1 402 70.9
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 4.5e-156 555.1 407 70.8
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.0e-155 553.9 412 70.6
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.5e-154 550.1 380 73.9
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 5.5e-154 548.1 398 71.1
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 5.5e-154 548.1 306 90.2
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.2e-154 547.7 378 74.1
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 7.2e-154 547.7 404 69.3
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 9.4e-154 547.4 306 88.9
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 2.1e-153 546.2 507 61.1
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 2.1e-153 546.2 346 76.6
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 3.6e-153 545.4 395 70.9
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.4e-152 543.5 347 76.9
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 5.2e-152 541.6 399 70.7
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.1e-151 540.4 397 70.5
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.8e-149 533.1 345 75.4
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.7e-147 526.6 347 74.6
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 9.4e-146 520.8 412 67.5
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.4e-143 511.9 384 70.3
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 6.3e-142 508.1 406 69.0
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 3.1e-141 505.8 408 67.6
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 5.4e-141 505.0 402 66.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 8.5e-139 497.7 337 72.7
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.6e-137 493.4 349 71.6
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.5e-135 486.9 337 71.2
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 2.0e-135 486.5 284 84.9
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.1e-130 470.7 387 65.6
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.4e-128 463.8 345 65.5
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 7.5e-119 431.4 464 53.9
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 5.4e-109 398.7 342 59.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 6.4e-86 322.0 298 60.7
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 8.7e-83 311.6 244 67.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.7e-78 297.4 253 65.6
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 7.6e-71 271.9 264 56.8
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 6.5e-70 268.9 160 82.5
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.1e-65 253.8 171 73.7
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 5.3e-64 249.2 203 60.6
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 3.8e-62 243.0 226 58.8
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.4e-56 223.8 267 50.6
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 5.5e-53 212.6 230 52.6
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 3.3e-50 203.4 179 66.5
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 5.9e-47 192.6 205 53.2
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 6.1e-44 182.6 110 80.9
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 7.9e-44 182.2 110 80.0
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 7.7e-39 165.6 379 34.0
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 7.7e-39 165.6 141 65.2
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.8e-38 163.3 100 76.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.2e-36 158.3 110 70.9
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.6e-36 157.9 350 32.6
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 6.7e-35 152.5 291 33.3
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.7e-33 146.7 149 59.7
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.8e-32 144.4 166 51.2
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.4e-32 144.1 166 51.2
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 5.3e-32 142.9 268 33.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.0e-23 114.4 78 74.4
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.2e-21 106.7 258 31.0
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 8.0e-20 102.4 211 31.3
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.3e-19 100.9 60 83.3
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 6.8e-19 99.4 66 77.3
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 8.8e-19 99.0 99 58.6
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 7.5e-18 95.9 62 72.6
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 6.3e-17 92.8 60 73.3
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.1e-16 92.0 130 38.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.0e-16 89.4 53 83.0
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 9.2e-16 89.0 55 80.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 2.0e-15 87.8 51 74.5
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.0e-15 87.8 52 82.7
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 4.5e-15 86.7 80 63.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 4.5e-15 86.7 80 63.8
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.7e-14 84.7 108 46.3
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 2.3e-14 84.3 194 29.9
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.9e-14 84.0 48 85.4
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.9e-14 84.0 48 85.4
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.9e-14 84.0 52 80.8
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.5e-13 81.6 51 78.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.5e-13 80.9 50 80.0
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 7.3e-13 79.3 51 66.7
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.8e-11 74.7 85 50.6
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 3.2e-08 63.9 38 81.6
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 4.1e-08 63.5 40 80.0


User provided reference genes

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