Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 3.4e-33 144.4 75 100.0
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 5.5e-31 137.1 75 96.0
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 5.5e-31 137.1 75 96.0
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-23 112.1 73 80.8
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 7.4e-20 100.1 75 74.7
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-18 96.3 90 62.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 5.9e-17 90.5 49 93.9
arahy.Tifrunner.gnm1.ann1.P5ABU7 Arachis hypogaea HOM05D005386 ORTHO05D085219 2.1e-14 82.0 46 93.5
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 4.7e-14 80.9 61 75.4
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 4.7e-14 80.9 61 75.4
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.5e-12 75.9 69 63.8
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 7.5e-12 73.6 68 63.2
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 1.3e-11 72.8 36 97.2
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.7e-11 72.4 61 65.6
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 2.2e-11 72.0 60 65.0
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 2.2e-11 72.0 60 65.0
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 3.7e-11 71.2 61 63.9
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.7e-11 71.2 68 60.3
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 4.8e-11 70.9 68 60.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 4.8e-11 70.9 67 59.7
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 6.3e-11 70.5 67 59.7
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.3e-11 70.1 69 59.4
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.1e-10 69.7 60 63.3
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.4e-10 69.3 68 60.3
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 1.8e-10 68.9 67 58.2
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.8e-10 68.9 60 63.3
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.8e-10 68.9 72 54.2
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.8e-10 68.9 72 54.2
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.8e-10 68.9 62 62.9
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 2.4e-10 68.6 67 56.7
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 3.1e-10 68.2 68 57.4
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.1e-10 68.2 61 60.7
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 3.1e-10 68.2 72 54.2
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 4.1e-10 67.8 61 60.7
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 4.1e-10 67.8 68 60.3
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 5.3e-10 67.4 67 55.2
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 5.3e-10 67.4 61 60.7
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 5.3e-10 67.4 61 60.7
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 5.3e-10 67.4 61 60.7
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 5.3e-10 67.4 61 60.7
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 5.3e-10 67.4 61 60.7
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.2e-09 66.2 61 60.7
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 1.6e-09 65.9 61 59.0
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.6e-09 65.9 60 61.7
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.0e-09 65.5 68 57.4
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 2.0e-09 65.5 66 54.5
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.7e-09 65.1 61 57.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.7e-09 65.1 61 60.7
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 3.5e-09 64.7 68 58.8
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 3.5e-09 64.7 61 57.4
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.5e-09 64.7 61 57.4
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 4.5e-09 64.3 67 55.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 4.5e-09 64.3 68 55.9
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 4.5e-09 64.3 60 58.3
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 5.9e-09 63.9 33 93.9
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 5.9e-09 63.9 61 57.4
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 7.7e-09 63.5 76 50.0
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 7.7e-09 63.5 68 54.4
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.3e-08 62.8 68 55.9
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-08 62.4 69 56.5
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.7e-08 62.4 60 56.7
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.7e-08 62.4 68 55.9
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 2.2e-08 62.0 70 51.4
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.9e-08 61.6 66 57.6
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.8e-08 61.2 69 56.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.0e-08 60.8 66 59.1
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.0e-08 60.8 66 59.1
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 5.0e-08 60.8 68 57.4
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 6.5e-08 60.5 61 55.7
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 8.5e-08 60.1 59 57.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.1e-07 59.7 68 58.8
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.1e-07 59.7 68 58.8
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 1.5e-07 59.3 61 55.7
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 1.5e-07 59.3 70 48.6
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 2.5e-07 58.5 69 59.4
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 4.2e-07 57.8 59 61.0
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 4.2e-07 57.8 61 55.7
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 5.5e-07 57.4 59 59.3
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 5.5e-07 57.4 59 59.3
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 5.5e-07 57.4 71 47.9
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 7.2e-07 57.0 68 55.9
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 7.2e-07 57.0 61 59.0
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 7.2e-07 57.0 61 54.1
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 9.4e-07 56.6 59 59.3
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.2e-06 56.2 68 55.9
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.2e-06 56.2 70 52.9
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.2e-06 56.2 61 59.0
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 1.6e-06 55.8 60 58.3
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 2.1e-06 55.5 61 57.4
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 2.1e-06 55.5 60 58.3
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 2.1e-06 55.5 70 52.9
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.7e-06 55.1 60 58.3
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 3.6e-06 54.7 59 50.8
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.6e-06 54.7 68 54.4
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.6e-06 54.7 68 54.4


User provided reference genes

Program Settings