Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 3.9e-117 424.9 221 100.0
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 7.1e-103 377.5 296 72.6
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 9.8e-52 207.6 111 95.5
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 7.5e-44 181.4 148 68.2
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 2.2e-43 179.9 126 75.4
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 4.9e-43 178.7 115 80.0
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 6.3e-43 178.3 116 75.9
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 6.3e-43 178.3 138 71.0
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 6.3e-43 178.3 119 77.3
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 1.8e-42 176.8 154 61.7
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.8e-42 176.8 172 54.1
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 1.8e-42 176.8 116 75.9
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.1e-42 175.6 171 55.0
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 5.4e-42 175.3 174 55.2
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 9.2e-42 174.5 116 74.1
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 9.2e-42 174.5 148 62.8
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.2e-41 174.1 116 75.0
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.2e-41 174.1 142 64.1
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.6e-41 173.7 116 75.9
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.0e-41 173.3 175 55.4
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.0e-41 173.3 116 74.1
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 3.5e-41 172.6 115 77.4
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 3.5e-41 172.6 139 63.3
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 4.5e-41 172.2 127 67.7
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 4.5e-41 172.2 162 58.0
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 7.7e-41 171.4 112 76.8
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 7.7e-41 171.4 121 71.1
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 1.0e-40 171.0 116 73.3
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.0e-40 171.0 116 75.0
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 1.3e-40 170.6 124 66.9
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.3e-40 170.6 128 68.8
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.3e-40 170.6 128 68.8
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.3e-40 170.6 116 72.4
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 2.3e-40 169.9 128 68.0
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 2.3e-40 169.9 162 61.1
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 2.9e-40 169.5 112 75.0
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 2.9e-40 169.5 155 58.1
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 2.9e-40 169.5 122 71.3
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 3.8e-40 169.1 112 75.0
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 3.8e-40 169.1 130 70.8
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 5.0e-40 168.7 123 66.7
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 5.0e-40 168.7 112 76.8
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 5.0e-40 168.7 112 75.0
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 6.6e-40 168.3 139 61.2
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 6.6e-40 168.3 108 78.7
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 8.6e-40 167.9 156 57.7
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 1.5e-39 167.2 114 72.8
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.5e-39 167.2 112 75.0
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.5e-39 167.2 127 66.9
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.5e-39 167.2 161 59.0
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.9e-39 166.8 116 70.7
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 2.5e-39 166.4 156 57.1
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 2.5e-39 166.4 116 70.7
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 3.3e-39 166.0 125 68.0
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 5.6e-39 165.2 128 61.7
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 7.3e-39 164.9 135 61.5
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 7.3e-39 164.9 114 70.2
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 7.3e-39 164.9 119 64.7
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 7.3e-39 164.9 119 64.7
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 9.5e-39 164.5 128 62.5
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 9.5e-39 164.5 114 67.5
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 9.5e-39 164.5 114 67.5
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 1.2e-38 164.1 125 67.2
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 1.2e-38 164.1 125 67.2
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 1.6e-38 163.7 114 70.2
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.6e-38 163.7 109 75.2
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 2.8e-38 162.9 142 57.0
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 2.8e-38 162.9 137 59.9
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.8e-38 162.9 115 71.3
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 3.6e-38 162.5 112 69.6
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 3.6e-38 162.5 167 55.7
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 6.1e-38 161.8 127 64.6
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 8.0e-38 161.4 124 64.5
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 8.0e-38 161.4 167 52.7
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 1.0e-37 161.0 119 67.2
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 1.0e-37 161.0 175 51.4
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 1.4e-37 160.6 112 73.2
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.8e-37 160.2 112 68.8
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 2.3e-37 159.8 179 53.1
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 3.0e-37 159.5 115 67.0
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 4.0e-37 159.1 120 62.5
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 5.2e-37 158.7 112 69.6
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 6.8e-37 158.3 125 64.8
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 8.9e-37 157.9 137 59.1
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 7.5e-36 154.8 137 57.7
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 9.8e-36 154.5 124 59.7
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 1.7e-35 153.7 124 58.9
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 1.7e-35 153.7 124 58.9
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 1.7e-35 153.7 124 58.9
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 3.7e-35 152.5 120 60.8
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 6.4e-35 151.8 174 52.3
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 7.0e-34 148.3 140 52.1
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 7.8e-33 144.8 112 59.8
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 1.0e-32 144.4 112 59.8
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 5.0e-32 142.1 109 63.3
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 6.6e-32 141.7 112 58.9
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 6.6e-32 141.7 112 58.9
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 8.6e-32 141.4 136 53.7
arahy.Tifrunner.gnm1.ann1.V2ETSI Arachis hypogaea HOM05D001703 ORTHO05D007194 4.0e-29 132.5 103 72.8
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 6.8e-29 131.7 116 58.6
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 7.5e-28 128.3 102 60.8
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 9.8e-28 127.9 88 70.5
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.3e-27 127.5 98 62.2
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 1.3e-27 127.5 124 52.4
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 4.9e-27 125.6 199 41.7
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 4.9e-27 125.6 128 51.6
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 2.4e-26 123.2 128 49.2
arahy.Tifrunner.gnm1.ann1.HL4WI4 Arachis hypogaea HOM05D001703 ORTHO05D007194 3.5e-25 119.4 103 68.9
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 5.0e-24 115.5 132 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 4.9e-19 99.0 117 45.3
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 9.2e-18 94.7 81 59.3
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 7.8e-17 91.7 169 33.1
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 1.9e-15 87.0 130 40.0
Glyma.17G137600 Glycine max HOM05D001703 ORTHO05D007194 8.9e-13 78.2 107 50.5
Glyma.05G055500 Glycine max HOM05D001703 ORTHO05D007194 2.6e-12 76.6 102 50.0
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 3.4e-12 76.3 45 73.3
Phvul.003G217300 Phaseolus vulgaris HOM05D001703 ORTHO05D007194 1.3e-11 74.3 102 50.0
VMungo0251G2731 Vigna mungo HOM05D001703 ORTHO05D007194 1.3e-11 74.3 87 54.0
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 2.4e-10 70.1 78 50.0
Lj4g0014291 Lotus japonicus HOM05D001703 ORTHO05D007194 1.1e-07 61.2 107 43.9
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.3e-07 59.7 38 71.1
PGR031G0567 Punica granatum HOM05D001703 ORTHO05D007194 5.6e-07 58.9 105 43.8
Medtr4g101750 Medicago truncatula HOM05D001703 ORTHO05D007194 7.3e-07 58.5 105 41.0
Prupe.5G076600 Prunus persica HOM05D001703 ORTHO05D007194 8.1e-06 55.1 105 45.7


User provided reference genes

Program Settings