Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9CDI8S Arachis hypogaea HOM05D004393 ORTHO05D004897 1.3e-61 239.6 121 100.0
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 8.0e-40 167.2 85 97.6
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 2.0e-22 109.4 99 59.6
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 5.8e-22 107.8 99 59.6
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.3e-21 106.7 90 61.1
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 3.7e-21 105.1 77 62.3
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 3.7e-21 105.1 96 56.2
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 6.4e-21 104.4 79 63.3
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.4e-20 103.2 82 56.1
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.9e-20 102.8 92 57.6
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.9e-20 102.8 87 58.6
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 1.9e-20 102.8 112 50.9
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 5.4e-20 101.3 77 61.0
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 1.2e-19 100.1 78 56.4
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 4.6e-19 98.2 77 57.1
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 4.6e-19 98.2 77 58.4
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 6.0e-19 97.8 77 57.1
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.0e-19 97.8 93 51.6
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 7.8e-19 97.4 78 56.4
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 7.8e-19 97.4 79 55.7
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 7.8e-19 97.4 76 59.2
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 7.8e-19 97.4 95 51.6
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 7.8e-19 97.4 95 51.6
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 1.0e-18 97.1 93 51.6
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 1.3e-18 96.7 77 54.5
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.7e-18 96.3 85 51.8
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 3.0e-18 95.5 90 51.1
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 3.0e-18 95.5 78 53.8
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.0e-18 95.5 93 50.5
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 3.0e-18 95.5 75 57.3
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 3.9e-18 95.1 74 60.8
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 3.9e-18 95.1 77 53.2
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 3.9e-18 95.1 85 52.9
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 5.0e-18 94.7 79 51.9
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 5.0e-18 94.7 91 50.5
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 5.0e-18 94.7 77 53.2
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 5.0e-18 94.7 75 57.3
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 6.6e-18 94.4 90 50.0
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 6.6e-18 94.4 77 51.9
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.6e-18 94.4 93 49.5
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 6.6e-18 94.4 77 54.5
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 8.6e-18 94.0 85 51.8
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 8.6e-18 94.0 94 46.8
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 8.6e-18 94.0 76 53.9
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 8.6e-18 94.0 76 53.9
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.1e-17 93.6 77 53.2
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.5e-17 93.2 87 49.4
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 1.5e-17 93.2 103 45.6
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.5e-17 93.2 77 51.9
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 1.5e-17 93.2 77 51.9
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 1.5e-17 93.2 77 49.4
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.9e-17 92.8 77 53.2
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 2.5e-17 92.4 81 53.1
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 2.5e-17 92.4 90 50.0
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 3.3e-17 92.0 81 54.3
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 3.3e-17 92.0 77 50.6
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 3.3e-17 92.0 77 53.2
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 3.3e-17 92.0 75 54.7
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 3.3e-17 92.0 72 54.2
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 4.3e-17 91.7 77 50.6
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 4.3e-17 91.7 85 50.6
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.6e-16 89.7 77 53.2
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 1.6e-16 89.7 103 42.7
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 1.6e-16 89.7 80 52.5
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 2.1e-16 89.4 75 54.7
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 2.1e-16 89.4 78 48.7
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.8e-16 89.0 72 51.4
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 2.8e-16 89.0 98 43.9
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 4.7e-16 88.2 85 47.1
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 4.7e-16 88.2 85 49.4
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 4.7e-16 88.2 76 51.3
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 6.2e-16 87.8 87 46.0
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 6.2e-16 87.8 77 48.1
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 8.1e-16 87.4 85 49.4
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 8.1e-16 87.4 77 46.8
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 8.1e-16 87.4 77 51.9
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 1.1e-15 87.0 78 48.7
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 1.4e-15 86.7 75 50.7
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 1.4e-15 86.7 77 50.6
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 1.4e-15 86.7 110 43.6
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 1.4e-15 86.7 95 47.4
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.1e-15 85.5 85 47.1
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 4.0e-15 85.1 94 46.8
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 6.8e-15 84.3 78 44.9
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 8.9e-15 84.0 103 41.7
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 8.9e-15 84.0 77 46.8
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 1.2e-14 83.6 72 50.0
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 2.0e-14 82.8 78 46.2
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 2.0e-14 82.8 78 46.2
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 2.0e-14 82.8 94 44.7
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 2.6e-14 82.4 97 43.3
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 2.6e-14 82.4 77 49.4
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 3.4e-14 82.0 94 43.6
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 3.4e-14 82.0 94 43.6
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 3.4e-14 82.0 94 43.6
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 3.4e-14 82.0 86 43.0
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 5.8e-14 81.3 79 46.8
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 5.8e-14 81.3 78 44.9
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 5.8e-14 81.3 94 42.6
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 7.5e-14 80.9 78 46.2
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 7.5e-14 80.9 78 43.6
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 1.7e-13 79.7 86 43.0
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 2.9e-13 79.0 78 42.3
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 2.9e-13 79.0 77 46.8
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 3.7e-13 78.6 78 42.3
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 4.9e-13 78.2 78 43.6
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 4.9e-13 78.2 78 42.3
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 4.9e-13 78.2 78 42.3
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 8.3e-13 77.4 123 37.4
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 1.1e-12 77.0 94 44.7
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 7.1e-12 74.3 76 43.4
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 9.2e-12 73.9 82 42.7
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.2e-11 73.6 72 44.4
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 1.6e-11 73.2 77 44.2
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 6.0e-11 71.2 77 41.6
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 1.0e-10 70.5 85 45.9
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 2.3e-10 69.3 74 44.6
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 3.9e-10 68.6 76 40.8
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 3.9e-10 68.6 76 40.8
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 6.6e-10 67.8 34 94.1
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 6.6e-10 67.8 76 40.8
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 6.6e-10 67.8 76 39.5
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 6.6e-10 67.8 85 47.1
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 1.1e-09 67.0 117 33.3
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 4.3e-09 65.1 70 42.9
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.3e-09 65.1 74 47.3
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 4.3e-09 65.1 109 33.9
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 6.2e-08 61.2 59 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 5.2e-07 58.2 94 38.3
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 8.9e-07 57.4 45 55.6
SEGI_25836 Sequoiadendron giganteum HOM05D001370 ORTHO05D004632 2.6e-06 55.8 82 35.4
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 3.4e-06 55.5 80 36.2
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 4.4e-06 55.1 82 39.0
CDE02G1515 Ceratophyllum demersum HOM05D005170 ORTHO05D006985 4.4e-06 55.1 84 38.1
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 5.8e-06 54.7 82 39.0
ECA246G1099 Erigeron canadensis HOM05D005170 ORTHO05D006985 9.9e-06 53.9 78 38.5
QL02p064873 Quercus lobata HOM05D005170 ORTHO05D006985 9.9e-06 53.9 85 37.6


User provided reference genes

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