Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 0.0e+00 1196.8 619 100.0
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 1.0e-303 1046.2 619 90.8
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.7e-122 444.1 620 47.6
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.7e-83 313.9 643 36.4
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 6.0e-83 312.8 644 36.8
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 6.0e-83 312.8 387 53.0
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.3e-82 310.8 629 36.2
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 3.0e-82 310.5 640 35.9
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 6.2e-80 302.8 391 49.6
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 5.8e-78 296.2 622 37.8
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.9e-77 293.9 520 40.6
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 1.1e-76 292.0 532 39.3
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.4e-76 291.6 645 33.3
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.3e-74 285.0 528 38.6
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 3.3e-73 280.4 631 33.8
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.3e-72 278.5 637 33.1
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.8e-72 277.3 643 34.1
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.8e-72 276.6 621 35.1
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 5.9e-70 269.6 532 38.7
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 8.5e-69 265.8 650 34.5
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 2.7e-67 260.8 509 37.7
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 4.3e-65 253.4 622 34.9
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.7e-64 251.5 629 32.4
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 3.7e-64 250.4 512 39.3
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.8e-63 248.1 652 34.2
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 2.0e-62 244.6 303 52.1
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.7e-61 241.5 524 36.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.2e-60 237.3 369 45.8
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 6.1e-59 233.0 613 31.5
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.8e-58 231.5 645 32.9
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.8e-58 231.5 355 46.2
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 2.3e-58 231.1 646 33.4
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.3e-58 231.1 637 32.7
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.3e-56 225.3 388 41.0
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.2e-56 224.6 479 35.3
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.1e-55 222.2 627 34.1
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.8e-55 221.5 610 32.5
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 7.2e-52 209.5 723 31.0
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.2e-51 208.8 338 43.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 8.0e-51 206.1 386 42.0
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 3.3e-49 200.7 211 57.8
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 4.5e-46 190.3 213 51.2
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 3.2e-44 184.1 204 54.9
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 3.3e-41 174.1 387 39.3
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 5.7e-41 173.3 187 51.9
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.7e-40 171.8 226 48.2
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 8.2e-40 169.5 181 53.6
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.1e-39 169.1 362 35.9
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.4e-39 168.7 413 35.8
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.4e-39 168.7 416 32.2
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 2.7e-38 164.5 620 27.4
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 4.5e-38 163.7 305 37.0
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 7.7e-38 162.9 185 54.6
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.0e-37 162.5 185 54.1
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 2.2e-37 161.4 383 36.8
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 5.0e-37 160.2 183 51.4
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 5.0e-37 160.2 175 47.4
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.1e-36 159.1 303 37.6
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 4.2e-36 157.1 376 34.3
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 9.4e-36 156.0 373 33.5
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 9.4e-36 156.0 356 31.5
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 2.7e-35 154.5 374 35.6
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 4.7e-35 153.7 377 35.0
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 3.0e-34 151.0 617 24.8
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 3.0e-34 151.0 630 27.5
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.4e-33 147.5 289 35.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 4.4e-33 147.1 283 38.9
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 4.4e-33 147.1 629 25.1
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 5.7e-33 146.7 301 34.6
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 7.5e-33 146.4 283 40.6
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 2.2e-32 144.8 360 32.8
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.1e-31 141.0 276 35.5
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.1e-31 141.0 235 45.1
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 3.1e-31 141.0 338 34.3
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 4.1e-31 140.6 288 34.7
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 5.9e-30 136.7 391 30.7
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.3e-29 135.6 350 33.4
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.7e-29 135.2 341 34.0
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 1.7e-29 135.2 275 40.7
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 2.9e-29 134.4 381 32.3
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 8.6e-29 132.9 622 24.8
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 8.6e-29 132.9 158 50.0
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 5.5e-28 130.2 334 34.4
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 9.5e-28 129.4 257 38.9
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.6e-27 128.6 187 39.0
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 2.8e-27 127.9 286 33.2
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 3.6e-27 127.5 278 34.9
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 3.6e-27 127.5 621 24.5
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 4.7e-27 127.1 150 46.0
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 6.1e-27 126.7 370 32.4
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.4e-26 125.6 278 34.5
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.8e-26 125.2 323 32.5
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 3.0e-26 124.4 371 30.5
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.0e-26 124.0 313 33.5
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.5e-25 122.1 97 52.6
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.5e-25 122.1 99 52.5
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 2.0e-25 121.7 388 29.9
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 3.4e-25 120.9 353 30.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 1.3e-24 119.0 99 54.5
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.7e-24 117.5 371 31.5
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 6.3e-24 116.7 375 32.0
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.4e-23 114.8 90 51.1
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 4.1e-23 114.0 90 51.1
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 9.2e-23 112.8 420 31.0
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 9.2e-23 112.8 90 51.1
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.7e-22 111.3 97 49.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 1.0e-21 109.4 101 49.5
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 7.3e-20 103.2 103 44.7
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 6.1e-19 100.1 302 30.8
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.4e-18 99.0 284 29.2
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.3e-18 98.2 75 52.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 1.5e-17 95.5 340 27.4
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.4e-17 94.4 155 38.7
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.3e-16 92.4 79 51.9
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 1.9e-15 88.6 111 43.2
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.2e-14 85.9 91 42.9
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.3e-13 82.4 106 40.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.5e-12 79.0 81 43.2
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.9e-12 78.6 75 49.3
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.5e-12 78.2 64 53.1
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 3.6e-11 74.3 82 41.5
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 6.2e-11 73.6 379 28.8
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 1.1e-10 72.8 48 64.6
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.3e-10 71.6 59 52.5
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 5.2e-10 70.5 64 46.9
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 4.9e-08 63.9 63 46.0
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 6.4e-08 63.5 170 32.9
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 1.4e-07 62.4 165 30.9
Psat0s911g0040 Pisum sativum HOM05D006067 ORTHO05D007327 3.5e-06 57.8 131 34.4


User provided reference genes

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