Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 0.0e+00 1383.6 717 100.0
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 0.0e+00 1163.7 680 91.2
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 2.9e-153 546.6 642 51.7
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.2e-143 514.6 630 52.4
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 1.6e-143 514.2 665 50.7
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.6e-140 504.2 631 52.3
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 4.0e-139 499.6 630 50.8
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.2e-135 488.0 620 51.1
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 8.7e-134 481.9 605 51.9
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 3.7e-132 476.5 604 51.0
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 6.2e-132 475.7 632 50.5
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 9.3e-128 461.8 565 52.4
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 6.8e-70 269.6 636 36.0
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 4.9e-68 263.5 635 35.7
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 1.4e-62 245.4 585 35.9
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 5.2e-62 243.4 652 34.0
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 5.8e-61 240.0 679 34.3
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 9.8e-61 239.2 650 35.4
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.9e-59 235.0 634 33.3
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 7.0e-59 233.0 588 34.9
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 7.0e-59 233.0 514 36.0
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 4.3e-56 223.8 591 34.2
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.6e-55 221.9 561 35.5
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 4.7e-55 220.3 566 35.0
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.4e-54 218.8 631 32.0
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.5e-53 215.3 691 31.3
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.2e-50 205.7 575 34.4
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.2e-50 205.7 605 32.4
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.6e-50 205.3 596 35.1
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.9e-48 198.4 700 30.6
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.3e-48 197.2 649 32.2
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.2e-47 195.7 659 31.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.1e-47 194.9 649 32.2
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 2.8e-47 194.5 601 31.9
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.8e-46 191.8 596 30.9
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.2e-45 189.1 668 31.1
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 2.2e-44 184.9 656 31.9
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.6e-42 178.7 653 31.4
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 3.5e-42 177.6 567 30.9
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 4.3e-40 170.6 635 30.9
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 7.3e-40 169.9 678 29.6
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.4e-38 164.9 665 28.0
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 4.0e-38 164.1 665 28.0
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-37 162.5 713 29.7
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.4e-37 160.6 656 28.4
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 9.9e-37 159.5 641 29.3
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 1.7e-36 158.7 631 28.7
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 3.8e-36 157.5 650 29.2
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.4e-35 154.8 708 28.7
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.4e-35 154.8 710 29.4
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.2e-35 154.1 664 27.3
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 4.6e-34 150.6 562 30.2
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 1.3e-33 149.1 640 27.8
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 8.7e-33 146.4 665 29.0
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 6.2e-31 140.2 634 28.5
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.3e-30 137.1 635 26.8
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 2.6e-29 134.8 459 31.2
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.3e-28 132.5 508 31.1
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.3e-25 122.5 546 28.6
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 2.5e-24 118.2 464 29.3
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 6.2e-23 113.6 642 26.9
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 6.2e-23 113.6 648 27.8
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.4e-22 111.7 588 26.4
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 5.3e-22 110.5 640 26.6
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 9.0e-22 109.8 638 26.2
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 3.4e-21 107.8 645 27.0
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 9.9e-21 106.3 684 25.9
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 4.9e-20 104.0 728 25.3
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.7e-18 98.2 520 29.0
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 3.5e-18 97.8 666 26.1
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.8e-17 95.5 572 26.0
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 5.1e-17 94.0 493 27.2
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.5e-16 92.4 763 25.7
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.6e-15 89.0 662 27.0
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.8e-15 88.2 637 24.3
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 1.8e-14 85.5 651 26.4
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 2.4e-14 85.1 634 24.8
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 5.3e-14 84.0 677 26.0
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 2.6e-13 81.6 642 24.5
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 3.4e-13 81.3 368 27.4
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.6e-13 80.1 507 26.4
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.9e-11 75.5 592 25.5
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 1.9e-11 75.5 604 26.2
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 2.5e-11 75.1 602 26.1
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 4.2e-11 74.3 592 26.4
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 5.5e-11 73.9 631 25.7
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 6.0e-10 70.5 607 25.7
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.3e-09 69.3 120 39.2
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 2.3e-09 68.6 277 29.6
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.9e-09 67.8 643 24.4
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 3.9e-09 67.8 494 25.7
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 6.7e-09 67.0 413 26.6
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 9.6e-08 63.2 508 24.4
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.3e-07 62.8 165 32.1
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 2.8e-07 61.6 704 24.3
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.4e-06 59.3 501 24.4
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.1e-06 58.2 578 24.0
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 4.1e-06 57.8 671 24.7


User provided reference genes

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