Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 5.7e-104 380.9 194 100.0
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 8.2e-103 377.1 194 99.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 7.0e-70 267.7 198 72.7
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.3e-68 263.5 188 72.9
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 5.0e-68 261.5 205 69.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 5.0e-68 261.5 197 73.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.1e-67 260.4 157 84.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.5e-67 259.2 194 73.7
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 5.5e-67 258.1 181 73.5
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-66 256.9 197 71.6
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.2e-66 256.9 171 80.1
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.6e-66 256.5 177 76.3
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 2.1e-66 256.1 179 73.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.1e-66 256.1 195 72.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.7e-66 255.8 199 72.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.7e-66 255.8 199 68.3
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.1e-66 254.6 196 70.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 8.0e-66 254.2 188 72.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.4e-65 253.4 185 74.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.4e-65 253.4 200 70.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-65 253.4 200 70.0
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-65 253.4 200 70.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.8e-65 253.1 193 70.5
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.8e-65 253.1 164 78.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-65 252.3 191 72.3
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.0e-65 252.3 198 70.7
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.0e-65 252.3 164 78.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-65 252.3 200 71.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.0e-65 252.3 199 72.4
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.0e-65 252.3 199 72.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.0e-65 251.9 187 72.7
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.0e-65 251.9 202 69.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.2e-65 251.5 198 70.7
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.8e-65 250.8 209 68.9
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.2e-64 250.4 209 68.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.2e-64 250.4 202 69.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.5e-64 250.0 199 71.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.0e-64 249.6 190 71.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.0e-64 249.6 165 75.8
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.0e-64 249.6 199 72.4
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.4e-64 248.8 163 78.5
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.4e-64 248.8 204 70.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.7e-64 248.1 210 68.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 5.7e-64 248.1 193 71.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 5.7e-64 248.1 180 73.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 5.7e-64 248.1 180 73.9
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 5.7e-64 248.1 195 71.3
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 7.5e-64 247.7 207 68.6
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 7.5e-64 247.7 194 69.1
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.8e-64 247.3 163 77.3
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.8e-64 247.3 206 66.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.3e-63 246.9 175 74.9
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.7e-63 246.5 210 68.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.7e-63 246.5 193 73.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 2.2e-63 246.1 194 71.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.2e-63 246.1 184 72.3
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-63 245.7 181 72.9
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-63 245.7 181 72.9
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.8e-63 245.7 181 72.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.8e-63 245.7 181 72.9
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.8e-63 245.7 193 70.5
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.8e-63 245.7 202 67.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.7e-63 245.4 172 73.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 3.7e-63 245.4 203 66.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.7e-63 245.4 202 66.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 3.7e-63 245.4 163 76.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 4.8e-63 245.0 185 71.4
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 6.3e-63 244.6 185 70.8
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.1e-62 243.8 161 73.9
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.4e-62 242.7 186 68.8
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.4e-62 242.7 194 69.1
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 4.1e-62 241.9 163 74.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 7.0e-62 241.1 189 69.8
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-61 240.4 194 69.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.6e-61 240.0 164 75.6
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.0e-61 239.6 186 68.8
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.7e-61 239.2 206 67.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 4.5e-61 238.4 217 64.5
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.0e-60 237.3 159 76.7
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.7e-60 236.5 183 68.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.7e-60 236.5 174 70.7
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.7e-60 236.5 217 64.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.2e-60 236.1 198 66.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.9e-60 235.7 181 70.7
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.9e-60 235.7 192 66.7
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 6.5e-60 234.6 207 63.3
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.5e-59 233.4 205 61.5
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.5e-59 232.6 155 74.8
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.5e-59 232.6 153 73.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 4.2e-59 231.9 153 74.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.5e-59 231.5 186 68.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.5e-59 231.5 186 68.3
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 9.4e-59 230.7 191 64.9
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-58 230.3 186 68.3
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.1e-58 229.6 196 64.8
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 4.7e-58 228.4 185 68.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.7e-58 228.4 199 67.3
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.0e-58 227.6 199 63.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.0e-57 227.3 214 59.8
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-56 223.0 182 69.2
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 4.4e-56 221.9 148 77.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.4e-56 221.9 196 63.3
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.5e-56 221.1 155 72.9
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.3e-55 220.3 196 63.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.9e-55 218.4 210 60.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.1e-54 217.2 210 59.5
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.0e-54 214.5 206 61.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 9.2e-54 214.2 300 48.7
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 9.2e-54 214.2 170 67.1
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.7e-53 212.6 121 86.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.5e-53 212.2 163 66.3
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.7e-52 209.9 158 69.0
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.3e-51 205.7 188 61.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.6e-50 203.4 182 64.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.1e-50 203.0 151 69.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.1e-50 203.0 190 63.2
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 8.0e-50 201.1 125 77.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.5e-48 194.5 179 59.8
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.5e-48 194.5 179 59.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.8e-46 189.9 187 56.7
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.0e-45 186.4 154 63.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.6e-45 185.3 156 62.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.3e-44 183.0 102 88.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.5e-43 179.5 120 75.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.2e-42 177.2 203 52.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 5.2e-41 171.8 213 49.8
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 7.0e-38 161.4 153 62.1
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.0e-37 159.8 93 82.8
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.6e-34 150.2 114 60.5
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.1e-34 149.8 112 62.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.1e-34 149.8 149 53.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 6.2e-34 148.3 192 44.8
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.6e-32 142.9 216 49.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 3.4e-32 142.5 81 87.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 9.8e-32 141.0 113 59.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.1e-30 137.5 106 57.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.7e-28 130.2 148 52.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.5e-24 117.1 67 82.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.5e-24 117.1 67 82.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.7e-23 113.6 80 70.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.6e-21 105.5 85 65.9
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.0e-17 92.4 87 59.8
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 8.9e-17 91.3 70 67.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-12 76.6 50 70.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-11 74.3 147 37.4
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.2e-08 64.3 63 57.1
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 4.2e-06 55.8 38 68.4


User provided reference genes

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