Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 8.3e-67 257.7 136 100.0
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 3.2e-66 255.8 135 100.0
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 3.3e-55 219.2 135 85.9
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 3.3e-55 219.2 135 85.9
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 1.5e-52 210.3 135 82.2
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 2.9e-51 206.1 135 80.0
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 3.8e-51 205.7 135 78.5
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 3.8e-51 205.7 135 78.5
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 4.9e-51 205.3 136 78.7
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 6.4e-51 204.9 135 81.5
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 6.4e-51 204.9 136 77.9
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.9e-50 203.4 136 77.9
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.9e-50 203.4 135 77.8
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 7.1e-50 201.4 136 79.4
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 9.3e-50 201.1 136 78.7
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 9.3e-50 201.1 135 78.5
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 1.2e-49 200.7 135 79.3
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.2e-49 200.7 135 78.5
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.6e-49 200.3 135 76.3
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.1e-49 199.9 135 74.8
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 6.0e-49 198.4 134 76.1
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 6.0e-49 198.4 135 77.0
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 7.8e-49 198.0 135 79.3
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.0e-48 197.6 135 77.0
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.7e-48 196.8 135 76.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.3e-48 196.4 136 75.7
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 3.9e-48 195.7 133 75.9
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 3.9e-48 195.7 135 74.8
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 5.1e-48 195.3 134 78.4
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 6.6e-48 194.9 135 75.6
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 8.7e-48 194.5 136 74.3
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.1e-47 194.1 136 77.2
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.5e-47 193.7 135 73.3
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.5e-47 193.7 135 73.3
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 1.9e-47 193.4 136 74.3
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 2.5e-47 193.0 136 75.0
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 5.6e-47 191.8 134 72.4
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 5.6e-47 191.8 134 76.9
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 7.3e-47 191.4 135 74.8
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.3e-47 191.4 131 77.1
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 2.8e-46 189.5 137 75.2
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.8e-46 189.5 137 74.5
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.8e-46 189.5 135 74.1
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 6.2e-46 188.3 135 70.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 1.8e-45 186.8 135 74.8
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 2.4e-45 186.4 135 70.4
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 3.1e-45 186.0 135 70.4
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 6.9e-45 184.9 136 72.1
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 9.0e-45 184.5 136 74.3
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 9.0e-45 184.5 133 72.9
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-44 184.1 135 69.6
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.5e-44 183.7 137 73.0
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.3e-43 180.6 131 73.3
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.2e-43 179.9 136 72.8
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 3.8e-43 179.1 131 69.5
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 3.8e-43 179.1 135 74.1
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 8.4e-43 177.9 136 67.6
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 8.4e-43 177.9 133 71.4
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 8.4e-43 177.9 136 70.6
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 8.4e-43 177.9 136 70.6
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 8.4e-43 177.9 137 70.1
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.1e-42 177.6 135 68.9
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.4e-42 177.2 136 69.9
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 1.4e-42 177.2 135 68.1
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.4e-42 176.4 136 69.1
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.4e-42 176.4 136 69.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 3.2e-42 176.0 135 68.1
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 4.2e-42 175.6 131 67.9
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 7.1e-42 174.9 135 65.2
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 9.3e-42 174.5 136 69.1
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 1.2e-41 174.1 134 70.1
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.6e-41 173.7 135 70.4
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.7e-41 172.9 134 67.2
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.5e-41 172.6 134 66.4
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 6.0e-41 171.8 135 68.1
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 7.9e-41 171.4 136 66.9
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 1.3e-40 170.6 135 65.2
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 3.0e-40 169.5 131 67.2
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 2.5e-39 166.4 135 63.7
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 2.5e-39 166.4 132 65.2
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 3.3e-39 166.0 135 64.4
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.3e-39 166.0 135 64.4
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 3.3e-39 166.0 135 64.4
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 3.3e-39 166.0 135 64.4
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 3.3e-39 166.0 135 64.4
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 3.3e-39 166.0 132 64.4
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 9.6e-39 164.5 135 63.0
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 9.6e-39 164.5 135 63.0
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 1.3e-38 164.1 135 63.7
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 2.1e-38 163.3 135 62.2
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-38 163.3 135 62.2
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.1e-38 163.3 136 67.6
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 2.1e-38 163.3 135 63.7
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 4.8e-38 162.2 135 62.2
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 4.8e-38 162.2 135 62.2
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.8e-38 162.2 135 62.2
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 8.1e-38 161.4 135 63.7
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 8.1e-38 161.4 135 63.7
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.8e-37 160.2 135 63.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 5.3e-37 158.7 126 65.9
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 6.9e-37 158.3 130 66.2
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.2e-36 157.5 131 64.9
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 2.6e-36 156.4 135 65.2
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 2.6e-36 156.4 131 61.8
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 2.4e-34 149.8 133 61.7
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 2.4e-34 149.8 133 61.7
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-34 149.4 131 62.6
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.6e-33 145.6 136 57.4
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.3e-32 143.3 135 56.3
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.1e-32 142.1 135 58.5
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.3e-31 139.4 100 72.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 4.3e-31 139.0 138 55.8
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 4.3e-31 139.0 138 55.8
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 4.3e-31 139.0 138 55.8
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 2.8e-30 136.3 138 55.1
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 2.8e-30 136.3 138 55.1
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 3.7e-30 136.0 138 55.1
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.8e-29 133.7 137 54.7
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-29 133.3 132 57.6
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 3.1e-29 132.9 139 56.1
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 5.3e-29 132.1 136 55.9
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 5.3e-29 132.1 136 55.9
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 6.9e-29 131.7 132 56.8
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 1.2e-28 131.0 132 56.8
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 3.4e-28 129.4 131 52.7
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.2e-27 126.7 135 54.1
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 4.9e-27 125.6 136 53.7
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.0e-24 117.9 98 63.3
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 2.5e-23 113.2 68 86.8
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 5.7e-23 112.1 139 52.5
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 5.7e-23 112.1 139 52.5
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 7.4e-23 111.7 132 51.5
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.3e-22 110.9 132 51.5
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.6e-22 110.5 132 50.0
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 8.2e-22 108.2 115 54.8
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.4e-21 106.7 100 62.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.1e-13 81.3 68 63.2
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 9.4e-10 68.2 133 36.8
FvH4_7g19390 Fragaria vesca HOM05D036880 ORTHO05D006491 6.3e-06 55.5 55 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2481 Anthoceros agrestis HOM05D005256 ORTHO05D006491 8.2e-06 55.1 112 32.1
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 8.2e-06 55.1 60 55.0


User provided reference genes

Program Settings