Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.9e-232 807.7 404 100.0
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.6e-212 741.9 396 94.4
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 3.3e-130 469.2 391 65.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.3e-130 468.8 391 65.5
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.8e-128 463.4 398 63.8
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 3.1e-128 462.6 391 64.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 5.2e-128 461.8 391 63.7
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.6e-127 459.5 397 64.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.9e-126 456.1 398 62.3
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 4.9e-126 455.3 400 61.2
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.9e-125 453.4 399 61.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.2e-125 452.6 398 61.8
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 7.1e-125 451.4 396 62.1
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.2e-124 450.7 387 63.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 7.3e-122 441.4 387 63.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.4e-119 432.6 392 61.7
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 4.9e-118 428.7 390 60.8
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-117 427.6 387 59.7
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.4e-117 426.4 387 60.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 3.2e-117 426.0 387 59.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.1e-116 423.3 387 58.9
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.1e-116 423.3 398 58.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.7e-116 422.9 384 59.6
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.0e-115 421.0 387 58.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.8e-115 420.2 399 58.4
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 1.8e-115 420.2 387 58.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.8e-115 420.2 388 59.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 5.1e-115 418.7 387 58.7
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.7e-115 418.3 387 58.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.7e-115 418.3 387 58.1
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.1e-114 417.5 385 57.9
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.5e-114 417.2 384 59.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.5e-114 417.2 380 60.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.3e-114 415.6 387 57.9
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.1e-113 413.3 384 59.1
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.8e-113 412.9 399 58.6
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.2e-113 411.8 387 57.4
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.4e-112 409.8 398 57.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.4e-112 409.8 398 57.0
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.4e-112 409.8 398 57.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 6.9e-112 408.3 385 58.7
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.4e-111 406.0 398 56.5
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 4.5e-111 405.6 385 57.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.3e-110 404.1 394 56.9
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 4.9e-110 402.1 390 56.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.4e-110 401.7 394 55.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 7.1e-109 398.3 382 58.6
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 9.3e-109 397.9 407 54.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 9.3e-109 397.9 389 56.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.1e-108 396.7 390 55.9
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.6e-108 395.6 398 55.5
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.9e-108 394.8 375 59.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.3e-107 393.3 391 55.8
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.3e-106 389.4 376 58.2
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.1e-105 386.7 425 52.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 2.1e-105 386.7 384 54.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.5e-103 380.6 389 53.7
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.2e-101 372.9 387 53.5
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 7.1e-101 371.7 354 57.6
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-100 370.9 394 51.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.7e-100 369.8 458 49.1
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.8e-99 367.1 388 52.6
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 3.0e-99 366.3 398 55.3
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.5e-98 363.2 399 51.4
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 5.7e-98 362.1 391 51.4
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.3e-97 360.9 386 51.0
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-97 360.1 381 53.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.2e-97 360.1 380 52.6
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.2e-97 360.1 395 50.9
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.7e-97 359.4 388 51.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.1e-96 355.9 385 51.2
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.1e-93 347.8 377 50.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.0e-91 341.3 394 50.3
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 4.3e-90 335.9 323 56.3
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-87 327.8 315 56.5
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.5e-87 327.4 384 49.5
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.5e-85 320.1 319 55.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.2e-81 307.0 419 46.3
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 4.2e-77 292.7 395 45.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.1e-76 288.9 406 42.6
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 8.0e-76 288.5 374 43.0
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 8.0e-76 288.5 251 62.9
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-69 267.7 255 58.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.4e-64 250.4 380 41.1
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-63 247.3 386 40.4
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.2e-62 243.8 391 39.6
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.2e-61 240.0 343 46.9
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 9.4e-61 238.4 369 41.7
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 9.4e-61 238.4 389 37.8
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 9.4e-61 238.4 394 38.1
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 2.1e-60 237.3 392 38.3
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.0e-60 235.3 396 38.4
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-59 235.0 379 40.4
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.2e-59 232.6 391 39.1
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-58 231.1 408 37.3
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.4e-58 229.9 387 39.0
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.4e-58 229.6 381 38.8
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.5e-58 228.8 385 39.0
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.2e-57 227.3 389 38.3
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-56 224.9 381 40.2
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.4e-56 223.8 394 38.3
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-55 221.5 391 38.4
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.7e-55 220.3 394 37.6
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-55 219.9 383 38.9
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.5e-55 219.5 365 40.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 7.7e-55 218.8 403 39.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 8.6e-54 215.3 387 37.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.2e-53 213.0 382 37.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.5e-53 212.6 387 37.0
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-52 211.5 393 36.4
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 2.1e-52 210.7 382 35.3
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 8.0e-52 208.8 400 38.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.0e-51 208.4 386 36.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.0e-51 208.4 400 37.8
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-51 207.6 387 38.5
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-51 207.2 400 37.8
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-51 207.2 400 37.8
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-51 206.8 386 37.3
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.8e-51 205.7 250 50.0
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.5e-50 204.5 390 35.6
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.9e-49 199.5 368 35.3
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.1e-48 196.4 380 36.1
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.3e-46 191.4 352 35.5
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-46 191.0 400 35.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.6e-46 189.1 382 34.8
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.2e-44 184.9 230 46.1
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-44 184.5 384 34.4
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-43 180.6 436 33.3
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 3.7e-41 173.3 386 31.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.9e-38 163.3 276 38.8
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-37 161.8 272 39.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.2e-36 156.0 383 31.1
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-30 138.3 268 36.9
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-30 137.1 403 28.3
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.1e-28 131.0 92 68.5
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-27 127.1 110 52.7
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 8.9e-27 125.6 115 50.4
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 2.0e-26 124.4 152 45.4
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.9e-25 120.6 190 40.5
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-23 115.2 148 44.6
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.7e-22 111.3 58 89.7
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.7e-22 111.3 77 71.4
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.3e-22 110.9 89 60.7
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.6e-21 106.3 151 41.1
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 8.9e-19 99.0 297 31.3
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 9.9e-18 95.5 320 25.3
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 3.8e-17 93.6 189 37.0
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 3.8e-17 93.6 176 34.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 7.1e-16 89.4 142 40.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.7e-14 82.4 83 53.0
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.1e-13 82.0 113 43.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.9e-13 81.3 113 42.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 2.5e-13 80.9 58 62.1
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-13 80.5 136 39.7
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.6e-12 78.2 75 60.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.6e-12 77.0 293 25.3
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.7e-12 76.6 61 54.1
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 4.7e-12 76.6 160 36.2
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.7e-12 76.6 103 45.6
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 3.1e-11 73.9 53 67.9
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.0e-11 73.6 81 53.1
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.5e-10 71.6 80 46.2
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.4e-10 70.5 60 51.7
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.4e-10 70.1 133 34.6
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 4.4e-10 70.1 63 47.6
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.9e-10 68.9 83 45.8
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 9.9e-10 68.9 161 34.2
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-09 68.6 79 45.6
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.2e-09 67.8 80 42.5
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.9e-09 67.4 81 44.4
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-08 65.5 94 42.6
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.2e-08 63.9 134 38.1
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.2e-07 62.0 56 50.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.7e-07 60.8 147 26.5
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.6e-07 60.1 90 37.8
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.3e-06 57.8 60 48.3
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.7e-06 55.8 87 42.5


User provided reference genes

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