Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 1.6e-85 319.3 156 100.0
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 4.2e-49 198.4 104 95.2
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.4e-36 156.0 81 95.1
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 4.8e-29 131.7 77 81.8
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.4e-28 130.2 77 84.4
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 4.1e-28 128.6 77 80.5
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 5.3e-28 128.3 77 81.8
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 5.3e-28 128.3 77 81.8
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 6.9e-28 127.9 78 80.8
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 9.1e-28 127.5 77 80.5
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 1.2e-27 127.1 77 80.5
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 1.5e-27 126.7 77 80.5
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 2.0e-27 126.3 77 79.2
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 2.6e-27 125.9 77 79.2
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.6e-27 125.9 77 80.5
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.4e-27 125.6 77 79.2
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 3.4e-27 125.6 77 79.2
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.4e-27 125.6 77 79.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 4.5e-27 125.2 77 77.9
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 5.9e-27 124.8 77 79.2
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 5.9e-27 124.8 79 74.7
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 7.7e-27 124.4 77 76.6
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 7.7e-27 124.4 77 77.9
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 7.7e-27 124.4 79 74.7
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 1.3e-26 123.6 77 75.3
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.3e-26 123.6 77 77.9
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-26 123.6 77 77.9
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.3e-26 123.6 77 77.9
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.2e-26 122.9 77 76.6
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 2.9e-26 122.5 77 77.9
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 3.8e-26 122.1 77 75.3
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.8e-26 122.1 77 74.0
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 8.5e-26 120.9 77 76.6
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-25 120.6 79 70.9
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 1.1e-25 120.6 77 75.3
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 1.4e-25 120.2 78 76.9
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-25 120.2 90 64.4
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 2.5e-25 119.4 77 74.0
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 3.2e-25 119.0 77 75.3
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 4.2e-25 118.6 77 74.0
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 4.2e-25 118.6 77 74.0
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 5.5e-25 118.2 77 71.4
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 7.2e-25 117.9 79 69.6
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 7.2e-25 117.9 77 74.0
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 9.4e-25 117.5 77 74.0
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 9.4e-25 117.5 77 75.3
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.6e-24 116.7 84 65.5
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.6e-24 116.7 77 71.4
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.6e-24 116.7 77 71.4
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.6e-24 116.7 77 76.6
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.7e-24 115.9 77 70.1
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 3.6e-24 115.5 77 74.0
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 4.7e-24 115.2 77 70.1
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 7.9e-24 114.4 90 64.4
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 7.9e-24 114.4 77 71.4
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 7.9e-24 114.4 77 71.4
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.0e-23 114.0 73 75.3
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.4e-23 113.6 77 71.4
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 1.4e-23 113.6 77 70.1
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.8e-23 113.2 77 70.1
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.8e-23 113.2 78 70.5
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.8e-23 113.2 77 71.4
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 2.3e-23 112.8 77 70.1
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 3.0e-23 112.5 82 63.4
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 3.0e-23 112.5 77 71.4
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 3.9e-23 112.1 77 70.1
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.9e-23 112.1 77 67.5
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 5.1e-23 111.7 77 68.8
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 6.7e-23 111.3 73 76.7
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 8.8e-23 110.9 81 64.2
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 8.8e-23 110.9 90 64.4
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 8.8e-23 110.9 77 68.8
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.1e-22 110.5 77 68.8
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.1e-22 110.5 77 68.8
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.0e-22 109.8 77 71.4
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 2.6e-22 109.4 77 67.5
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 2.6e-22 109.4 79 70.9
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 2.6e-22 109.4 88 61.4
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.6e-22 109.4 79 63.3
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 3.3e-22 109.0 77 67.5
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 3.3e-22 109.0 77 67.5
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 3.3e-22 109.0 77 67.5
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 4.4e-22 108.6 73 71.2
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.7e-22 108.2 77 64.9
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 5.7e-22 108.2 77 67.5
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 7.4e-22 107.8 85 57.6
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 9.7e-22 107.5 78 67.9
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 9.7e-22 107.5 77 66.2
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.7e-21 106.7 77 67.5
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.7e-21 106.7 77 68.8
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 2.2e-21 106.3 77 67.5
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 2.2e-21 106.3 77 67.5
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 2.8e-21 105.9 75 66.7
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.8e-21 105.9 78 65.4
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.8e-21 105.9 75 68.0
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 2.8e-21 105.9 77 66.2
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 3.7e-21 105.5 84 63.1
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 4.8e-21 105.1 77 64.9
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 6.3e-21 104.8 77 63.6
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 6.3e-21 104.8 79 64.6
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 8.2e-21 104.4 77 64.9
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.1e-20 104.0 78 65.4
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.4e-20 103.6 107 51.4
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.8e-20 103.2 78 64.1
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.8e-20 103.2 78 64.1
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.8e-20 103.2 78 64.1
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.4e-20 102.8 77 63.6
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.4e-20 102.8 77 64.9
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.4e-20 102.8 80 63.8
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 3.1e-20 102.4 78 66.7
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 4.1e-20 102.1 77 64.9
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 5.3e-20 101.7 78 64.1
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.3e-20 101.7 78 64.1
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 5.3e-20 101.7 78 64.1
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.3e-20 101.7 77 61.0
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 5.3e-20 101.7 78 64.1
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 5.3e-20 101.7 77 61.0
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.3e-20 101.7 77 62.3
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 7.0e-20 101.3 78 64.1
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 7.0e-20 101.3 78 64.1
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 7.0e-20 101.3 78 62.8
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 7.0e-20 101.3 78 62.8
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 7.0e-20 101.3 78 62.8
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 7.0e-20 101.3 95 54.7
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 9.1e-20 100.9 78 64.1
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.2e-19 100.5 78 62.8
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.2e-19 100.5 78 62.8
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.2e-19 100.5 77 58.4
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.2e-19 100.5 77 61.0
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 1.5e-19 100.1 77 63.6
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 1.5e-19 100.1 77 63.6
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.0e-19 99.8 78 62.8
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.0e-19 99.8 78 62.8
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.0e-19 99.8 78 64.1
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.0e-19 99.8 75 64.0
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 2.6e-19 99.4 77 61.0
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 5.9e-19 98.2 77 62.3
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 5.9e-19 98.2 77 62.3
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 7.7e-19 97.8 77 58.4
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.0e-18 97.4 68 66.2
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.3e-18 97.1 77 63.6
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.7e-18 96.7 77 61.0
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.9e-18 95.9 77 61.0
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 3.8e-18 95.5 77 63.6
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 8.5e-18 94.4 77 57.1
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 8.5e-18 94.4 69 69.6
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 1.9e-17 93.2 63 73.0
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.5e-17 92.8 80 56.2
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.5e-17 92.8 69 68.1
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 4.2e-17 92.0 75 58.7
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.5e-17 91.7 77 59.7
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 5.5e-17 91.7 78 57.7
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.2e-17 91.3 77 59.7
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 1.2e-16 90.5 54 77.8
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 1.2e-16 90.5 77 54.5
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 1.6e-16 90.1 77 55.8
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.1e-16 89.7 77 55.8
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 2.1e-16 89.7 77 55.8
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 2.1e-16 89.7 75 56.0
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 3.6e-16 89.0 78 56.4
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 6.1e-16 88.2 77 55.8
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 3.0e-15 85.9 77 54.5
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 5.2e-15 85.1 55 72.7
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 6.7e-15 84.7 61 65.6
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.1e-14 84.0 68 58.8
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 2.0e-14 83.2 76 53.9
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 4.8e-13 78.6 71 56.3
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 1.2e-11 73.9 50 66.0
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.6e-11 72.8 41 85.4
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.3e-10 70.5 39 87.2
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 1.1e-09 67.4 77 46.8
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 9.4e-09 64.3 81 43.2
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 2.1e-08 63.2 79 44.3
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.7e-08 62.8 41 73.2
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 6.1e-08 61.6 72 48.6
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 2.3e-07 59.7 35 74.3
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.6e-06 56.2 42 69.0


User provided reference genes

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