Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 4.0e-125 451.4 225 100.0
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-106 389.8 238 84.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-102 375.6 202 93.1
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-31 140.6 71 98.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 4.3e-31 139.0 70 97.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-30 137.1 69 97.1
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-30 136.3 69 97.1
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.2e-26 122.5 70 82.9
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.5e-26 122.1 76 78.9
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 7.2e-26 121.7 76 78.9
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 7.2e-26 121.7 76 78.9
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-25 120.9 70 81.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.6e-25 120.6 76 77.6
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 2.1e-25 120.2 69 81.2
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.7e-25 119.8 76 77.6
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 6.1e-25 118.6 111 53.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.9e-25 118.2 69 81.2
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.0e-24 117.9 76 75.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.4e-24 117.5 111 53.2
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.4e-24 117.5 69 81.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.4e-24 117.5 69 78.3
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.3e-24 116.7 69 79.7
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.3e-24 116.7 70 77.1
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.3e-24 116.7 69 81.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.3e-24 116.7 69 79.7
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.9e-24 115.9 76 75.0
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.9e-24 115.9 76 73.7
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 3.9e-24 115.9 70 74.3
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 5.1e-24 115.5 69 78.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.7e-24 115.2 76 75.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 8.8e-24 114.8 70 75.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.1e-23 114.4 76 73.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.1e-23 114.4 69 76.8
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.5e-23 114.0 69 76.8
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.5e-23 114.0 69 78.3
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.0e-23 113.6 69 75.4
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-23 113.6 76 73.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-23 113.6 76 73.7
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.5e-23 113.2 69 73.9
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 3.3e-23 112.8 69 73.9
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 4.3e-23 112.5 69 76.8
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 4.3e-23 112.5 69 73.9
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.7e-23 112.1 69 75.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.7e-23 112.1 70 75.7
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 7.4e-23 111.7 76 72.4
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 7.4e-23 111.7 69 72.5
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 7.4e-23 111.7 69 76.8
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 9.7e-23 111.3 69 75.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 9.7e-23 111.3 70 75.7
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.3e-22 110.9 69 73.9
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.3e-22 110.9 69 73.9
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.3e-22 110.9 76 72.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.2e-22 110.2 69 73.9
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.8e-22 109.8 69 75.4
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.7e-22 109.4 69 72.5
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 6.3e-22 108.6 69 75.4
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 6.3e-22 108.6 69 71.0
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 8.2e-22 108.2 70 65.7
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 8.2e-22 108.2 69 71.0
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-21 107.5 69 72.5
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.8e-21 107.1 69 72.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.1e-21 106.3 77 64.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.1e-21 105.9 76 67.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.1e-21 105.9 76 67.1
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.3e-21 105.5 69 69.6
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.3e-21 105.5 70 75.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.9e-21 105.1 80 61.2
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-20 104.4 61 80.3
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.5e-20 104.0 69 69.6
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.0e-20 103.6 76 67.1
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 2.6e-20 103.2 69 69.6
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 4.5e-20 102.4 70 65.7
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.0e-19 101.3 70 72.9
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.3e-19 100.9 69 68.1
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.7e-19 100.5 70 67.1
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.7e-19 100.5 68 66.2
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 2.2e-19 100.1 70 65.7
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.2e-19 100.1 69 68.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.2e-19 100.1 70 65.7
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.2e-19 100.1 69 63.8
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.9e-19 99.8 69 66.7
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.9e-19 99.8 61 75.4
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 5.0e-19 99.0 68 67.6
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 6.5e-19 98.6 70 64.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 6.5e-19 98.6 70 67.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.5e-19 98.2 76 63.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 8.5e-19 98.2 70 70.0
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.1e-18 97.8 70 65.7
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.4e-18 97.4 76 60.5
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.5e-18 96.7 69 62.3
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 3.2e-18 96.3 68 66.2
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 3.2e-18 96.3 70 61.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 3.2e-18 96.3 69 63.8
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.2e-18 95.9 68 64.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 7.2e-18 95.1 70 70.0
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 9.4e-18 94.7 69 62.3
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 9.4e-18 94.7 61 72.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 2.1e-17 93.6 80 58.8
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.6e-17 92.8 70 62.9
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-16 91.3 71 60.6
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-16 91.3 71 60.6
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.0e-16 91.3 71 60.6
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.4e-16 90.9 71 60.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.3e-16 90.1 71 59.2
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.9e-16 89.4 71 60.6
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.9e-16 89.4 71 59.2
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.9e-16 89.4 71 57.7
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.9e-16 89.4 70 58.6
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.1e-16 89.0 71 59.2
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 5.1e-16 89.0 71 59.2
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 6.7e-16 88.6 71 57.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 6.7e-16 88.6 71 62.0
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 6.7e-16 88.6 71 57.7
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 6.7e-16 88.6 71 57.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 8.8e-16 88.2 71 59.2
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-15 87.8 71 59.2
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-15 87.8 71 59.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-15 87.8 71 59.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.1e-15 87.8 71 59.2
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.1e-15 87.8 71 59.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.1e-15 87.8 71 57.7
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.5e-15 87.4 71 57.7
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.6e-15 86.7 71 56.3
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 2.6e-15 86.7 71 59.2
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 3.3e-15 86.3 71 56.3
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 5.7e-15 85.5 71 59.2
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.8e-14 82.4 59 59.3
arahy.Tifrunner.gnm1.ann1.B2A0B9 Arachis hypogaea HOM05D036878 ORTHO05D084945 1.8e-13 80.5 43 86.0
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 5.3e-13 79.0 71 50.7
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 9.1e-13 78.2 216 32.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.2e-12 77.8 81 46.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-12 77.8 51 70.6
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.5e-12 75.9 55 63.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.2e-10 68.6 41 80.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 7.2e-10 68.6 67 46.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 9.4e-10 68.2 60 51.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.2e-09 67.8 70 40.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.7e-09 66.6 49 65.3
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 3.6e-09 66.2 54 57.4


User provided reference genes

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