Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 9.2e-66 253.4 131 100.0
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.6e-65 252.7 131 99.2
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 2.0e-65 252.3 131 98.5
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.9e-64 248.1 131 96.9
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.9e-64 248.1 131 96.9
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 6.6e-64 247.3 131 96.2
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 6.6e-64 247.3 131 96.2
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 6.6e-64 247.3 131 96.9
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 8.6e-64 246.9 131 96.2
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.1e-63 246.5 131 96.9
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 1.5e-63 246.1 131 96.2
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.5e-63 246.1 131 95.4
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.5e-63 246.1 131 95.4
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 1.9e-63 245.7 131 94.7
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 1.9e-63 245.7 131 95.4
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.5e-63 245.4 131 95.4
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 2.5e-63 245.4 131 95.4
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 4.3e-63 244.6 131 96.2
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.6e-63 244.2 131 94.7
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.6e-63 244.2 131 94.7
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.6e-63 244.2 131 95.4
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.2e-62 243.0 131 93.9
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.6e-62 242.7 131 93.9
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.6e-62 242.7 131 94.7
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 2.1e-62 242.3 131 95.4
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.1e-62 242.3 131 94.7
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.1e-62 242.3 131 94.7
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.1e-62 242.3 131 94.7
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 2.1e-62 242.3 131 93.9
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.8e-62 241.9 131 93.1
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 2.8e-62 241.9 131 92.4
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 3.6e-62 241.5 131 92.4
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.6e-62 241.5 131 93.1
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 3.6e-62 241.5 131 92.4
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 4.7e-62 241.1 131 93.9
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 4.7e-62 241.1 131 93.9
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 4.7e-62 241.1 131 93.1
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 6.2e-62 240.7 131 93.1
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 8.1e-62 240.4 131 94.7
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 8.1e-62 240.4 129 94.6
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 8.1e-62 240.4 129 94.6
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 8.1e-62 240.4 131 93.1
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 8.1e-62 240.4 131 93.1
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 8.1e-62 240.4 131 93.1
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 1.1e-61 240.0 131 93.9
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 95.4
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 93.9
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 93.1
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 90.8
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 2.3e-61 238.8 131 92.4
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 2.3e-61 238.8 131 93.1
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 2.3e-61 238.8 131 93.9
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 2.3e-61 238.8 131 92.4
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 2.3e-61 238.8 131 93.1
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.1e-61 238.4 131 91.6
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 3.1e-61 238.4 129 93.0
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 3.1e-61 238.4 131 92.4
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 3.1e-61 238.4 131 93.1
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 4.0e-61 238.0 131 92.4
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 5.2e-61 237.7 131 92.4
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 5.2e-61 237.7 131 93.9
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 5.2e-61 237.7 131 90.8
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 91.6
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 93.1
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 92.4
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 92.4
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 91.6
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 8.9e-61 236.9 131 90.8
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 1.2e-60 236.5 131 91.6
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 1.2e-60 236.5 129 91.5
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 1.2e-60 236.5 131 91.6
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 1.5e-60 236.1 131 92.4
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.0e-60 235.7 131 92.4
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 2.0e-60 235.7 131 90.8
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.6e-60 235.3 131 90.8
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 2.6e-60 235.3 129 89.9
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 93.9
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 90.8
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 91.6
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 91.6
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.8
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 92.4
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.1
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 9.8e-60 233.4 131 87.8
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 9.8e-60 233.4 131 90.1
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.3e-59 233.0 129 91.5
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.7e-59 232.6 123 95.1
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 90.8
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.7e-59 232.6 130 90.8
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 2.2e-59 232.3 131 91.6
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 90.8
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 2.9e-59 231.9 131 89.3
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 3.7e-59 231.5 131 89.3
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 3.7e-59 231.5 131 90.8
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 89.3
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 90.8
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 6.4e-59 230.7 131 89.3
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 6.4e-59 230.7 131 88.5
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 8.3e-59 230.3 130 88.5
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 8.3e-59 230.3 126 89.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 90.1
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 90.8
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 1.1e-58 229.9 126 91.3
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 2.4e-58 228.8 129 89.1
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 87.0
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 89.3
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 87.8
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 3.2e-58 228.4 126 89.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 3.2e-58 228.4 126 89.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 3.2e-58 228.4 126 89.7
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.2e-58 228.4 131 89.3
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 3.2e-58 228.4 126 90.5
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 5.4e-58 227.6 126 88.9
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 5.4e-58 227.6 126 88.9
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 5.4e-58 227.6 126 88.9
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.1e-58 227.3 131 87.8
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-57 226.5 131 90.1
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 6.0e-57 224.2 129 88.4
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 1.7e-56 222.6 133 85.7
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 8.6e-56 220.3 131 87.8
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 8.6e-56 220.3 131 87.8
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 1.9e-55 219.2 160 75.0
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 4.3e-55 218.0 139 81.3
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 5.6e-55 217.6 115 95.7
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 5.6e-55 217.6 115 96.5
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 5.6e-55 217.6 131 86.3
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 9.5e-55 216.9 115 94.8
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 1.2e-54 216.5 139 80.6
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 1.6e-54 216.1 131 86.3
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 2.8e-54 215.3 115 94.8
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 3.6e-54 214.9 110 100.0
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 8.1e-54 213.8 115 95.7
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.9e-53 210.3 111 94.6
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.6e-52 208.8 156 75.0
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.1e-50 201.4 114 86.0
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 5.4e-50 201.1 122 85.2
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 7.1e-50 200.7 128 77.3
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 9.2e-50 200.3 125 76.0
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.7e-49 198.7 117 87.2
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 2.7e-49 198.7 129 81.4
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 6.0e-49 197.6 123 76.4
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 3.3e-47 191.8 126 71.4
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.7e-46 188.0 105 86.7
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.7e-46 188.0 105 86.7
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.2e-46 187.6 112 81.2
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 8.1e-46 187.2 100 93.0
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 72.7
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.9e-43 177.9 115 83.5
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.9e-43 177.9 115 83.5
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.4e-43 177.2 102 83.3
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 2.4e-42 175.6 98 86.7
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.0e-40 170.2 131 73.3
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 8.7e-40 167.2 129 69.8
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.3e-39 164.1 112 73.2
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 7.3e-39 164.1 115 67.0
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 6.2e-38 161.0 89 92.1
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 6.2e-38 161.0 115 67.0
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 9.0e-37 157.1 115 62.6
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.5e-36 156.4 103 78.6
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 2.6e-36 155.6 82 92.7
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 5.8e-36 154.5 82 91.5
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 3.8e-35 151.8 82 91.5
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 4.3e-31 138.3 80 87.5
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 4.9e-27 124.8 78 79.5
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 8.4e-27 124.0 153 51.0
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 4.2e-26 121.7 77 75.3
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 9.3e-26 120.6 128 47.7
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.6e-25 119.8 63 93.7
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.0e-24 115.5 69 84.1
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.5e-23 113.2 68 80.9
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 6.9e-21 104.4 55 92.7
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 3.4e-20 102.1 52 94.2
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 4.5e-20 101.7 52 94.2
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 4.9e-19 98.2 67 73.1
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.1e-15 87.0 58 81.0
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 2.1e-14 82.8 48 81.2
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 8.4e-11 70.9 35 91.4
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-10 70.5 35 85.7


User provided reference genes

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