Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.94PN3C Arachis hypogaea HOM05D004936 ORTHO05D005977 2.8e-54 214.9 101 100.0
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 7.7e-28 127.1 116 59.5
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 3.3e-07 58.5 28 92.9
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 3.3e-07 58.5 28 92.9
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 4.4e-07 58.2 28 89.3
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 4.4e-07 58.2 28 89.3
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 9.7e-07 57.0 28 89.3
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 9.7e-07 57.0 28 89.3
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 9.7e-07 57.0 28 89.3
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 1.3e-06 56.6 28 85.7
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.3e-06 56.6 28 85.7
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 1.7e-06 56.2 28 85.7
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 1.7e-06 56.2 28 85.7
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.7e-06 56.2 28 85.7
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.7e-06 56.2 28 85.7
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 2.2e-06 55.8 28 85.7
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 2.2e-06 55.8 28 85.7
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.2e-06 55.8 28 85.7
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.2e-06 55.8 27 88.9
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 2.2e-06 55.8 27 88.9
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 2.8e-06 55.5 27 88.9
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 2.8e-06 55.5 27 88.9
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 2.8e-06 55.5 27 88.9
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 2.8e-06 55.5 27 88.9
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 3.7e-06 55.1 27 88.9
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 4.8e-06 54.7 28 82.1
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 4.8e-06 54.7 28 85.7
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 4.8e-06 54.7 28 82.1
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 6.3e-06 54.3 28 82.1
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 6.3e-06 54.3 27 88.9
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 6.3e-06 54.3 28 82.1
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 6.3e-06 54.3 28 82.1
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 8.2e-06 53.9 28 82.1
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 8.2e-06 53.9 28 82.1
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 8.2e-06 53.9 26 92.3
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 8.2e-06 53.9 28 82.1
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 8.2e-06 53.9 28 82.1
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 8.2e-06 53.9 27 85.2


User provided reference genes

Program Settings