Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 0.0e+00 2631.3 1317 100.0
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 0.0e+00 2573.1 1315 97.4
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 0.0e+00 1527.3 1352 60.6
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 0.0e+00 1479.5 1349 60.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 0.0e+00 1448.3 1343 58.2
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 0.0e+00 1347.8 1200 60.0
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 0.0e+00 1077.8 941 60.7
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.4e-278 963.0 1409 42.1
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 2.4e-275 953.0 1387 43.6
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 2.1e-274 949.9 1327 43.5
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 8.7e-273 944.5 1387 42.8
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 1.5e-272 943.7 1426 42.8
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 3.7e-271 939.1 1386 41.6
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 2.7e-266 922.9 1407 41.2
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 7.2e-259 898.3 1471 40.5
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 3.5e-258 896.0 1392 41.0
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 3.9e-257 892.5 1407 40.5
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 6.9e-246 855.1 1407 40.2
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 9.1e-246 854.7 1418 39.4
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 1.7e-244 850.5 1399 38.8
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 5.5e-243 845.5 1381 40.4
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 4.7e-242 842.4 1407 38.3
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.7e-240 835.5 1411 39.6
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 4.8e-239 832.4 1181 44.6
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 1.1e-238 831.2 1362 40.5
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 4.5e-237 825.9 1403 38.7
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 1.7e-236 823.9 1384 39.2
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 7.2e-235 818.5 1391 38.7
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.1e-234 815.5 1437 39.0
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.2e-229 801.2 1415 38.0
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 7.0e-222 775.4 1400 38.6
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 3.5e-221 773.1 1392 37.6
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 1.1e-219 768.1 1349 37.1
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.1e-214 751.5 1325 36.9
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 1.7e-212 744.2 1420 36.4
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 5.0e-212 742.7 1443 35.7
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.5e-211 741.1 1342 38.5
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 2.5e-211 740.3 1390 36.3
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 6.1e-210 735.7 1343 35.3
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 6.8e-209 732.3 1338 36.1
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 2.0e-208 730.7 1387 36.3
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 4.4e-208 729.6 1387 36.1
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 5.4e-206 722.6 1353 37.1
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 7.0e-206 722.2 1386 35.4
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.2e-205 721.5 1357 37.1
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 3.0e-204 716.8 1394 36.2
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 5.4e-198 696.0 1401 36.5
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 2.3e-196 690.6 1363 35.5
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 8.6e-196 688.7 1381 34.4
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.2e-192 678.3 1372 34.5
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 7.5e-192 675.6 1356 35.9
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 2.1e-189 667.5 1326 34.9
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 1.2e-184 651.7 1427 34.5
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 2.9e-183 647.1 1403 31.9
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 8.4e-183 645.6 1304 34.5
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 1.4e-182 644.8 1315 34.1
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 1.7e-180 637.9 1373 34.1
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 2.3e-180 637.5 1374 33.8
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 2.2e-175 620.9 1315 33.8
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 3.8e-175 620.2 1183 35.2
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 8.4e-175 619.0 1315 34.1
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 4.2e-174 616.7 1305 34.5
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 6.6e-172 609.4 1402 34.2
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.9e-171 607.8 1347 32.9
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 1.9e-171 607.8 1348 32.9
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 4.3e-171 606.7 1344 33.1
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.6e-170 604.7 1165 35.5
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.6e-170 604.7 1338 32.9
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 4.8e-170 603.2 1354 32.7
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.1e-169 602.1 1352 32.8
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.1e-169 602.1 1341 31.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 4.0e-169 600.1 1388 33.8
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.8e-167 593.6 1199 34.7
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 1.1e-166 592.0 1398 32.2
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 2.3e-156 557.8 1429 31.6
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.1e-155 555.4 1522 30.5
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 7.4e-155 552.7 1303 32.7
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 1.5e-152 545.0 459 64.7
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.3e-147 527.3 1039 35.5
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 1.3e-146 525.4 1166 33.3
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 4.2e-134 483.8 1027 35.4
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 5.2e-124 450.3 832 38.3
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 5.2e-124 450.3 1313 28.1
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 2.8e-122 444.5 716 39.7
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 5.2e-116 423.7 1316 28.6
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.5e-115 419.9 940 31.6
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 5.3e-113 413.7 1324 28.1
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 2.6e-107 394.8 405 56.3
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 5.7e-99 367.1 806 34.5
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 5.6e-94 350.5 422 46.0
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 3.6e-93 347.8 390 49.2
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.0e-89 333.6 359 51.5
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.7e-87 328.9 440 43.0
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 7.0e-81 307.0 644 34.8
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 4.6e-80 304.3 254 60.6
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.3e-74 286.2 369 44.2
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-72 279.3 275 53.5
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.6e-70 270.8 359 45.4
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 6.2e-69 267.3 669 30.2
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 4.6e-64 251.1 201 61.7
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 1.3e-63 249.6 455 34.9
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.9e-62 245.7 360 41.1
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-62 245.0 259 51.4
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 4.9e-58 231.1 405 38.5
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 9.9e-51 206.8 144 66.7
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.0e-47 196.8 325 37.8
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.3e-47 195.7 211 50.7
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 1.1e-46 193.4 1272 22.1
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 3.7e-45 188.3 262 43.5
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 2.4e-41 175.6 599 28.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 9.3e-41 173.7 646 26.0
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 1.5e-38 166.4 520 25.6
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 4.6e-32 144.8 153 43.8
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.9e-30 139.4 127 58.3
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 1.3e-29 136.7 585 24.3
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 4.3e-22 111.7 209 36.4
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.2e-19 103.6 183 34.4
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.0e-18 100.5 207 31.9
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 2.5e-17 95.9 57 77.2
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 9.4e-17 94.0 196 34.2
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 9.7e-14 84.0 52 76.9
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.7e-13 83.2 51 74.5
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 3.7e-13 82.0 214 32.2
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.4e-12 79.3 270 26.3
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 1.7e-10 73.2 546 21.8
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.8e-10 72.0 293 26.6
Lalb_Chr04g0264221 Lupinus albus HOM05D006182 ORTHO05D007236 2.7e-08 65.9 42 64.3
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 4.7e-08 65.1 177 31.1


User provided reference genes

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