Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 3.9e-279 964.1 488 100.0
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 4.7e-256 887.5 488 93.6
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.5e-214 749.6 490 80.0
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.7e-210 736.1 490 79.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 3.0e-210 735.3 490 78.6
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.6e-208 729.6 491 78.0
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 3.1e-207 725.3 493 78.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.9e-205 718.0 493 77.9
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 6.6e-202 707.6 499 74.7
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.1e-199 698.7 504 74.6
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 7.4e-185 651.0 497 69.2
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.4e-183 646.7 491 69.0
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 6.9e-183 644.4 492 68.3
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 7.6e-182 641.0 492 69.1
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.7e-181 639.8 491 67.8
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 1.1e-180 637.1 493 67.7
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 7.1e-180 634.4 491 67.0
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 4.6e-179 631.7 492 67.7
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 6.0e-179 631.3 493 67.5
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.5e-177 625.9 491 66.4
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 4.3e-177 625.2 501 68.5
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.7e-176 622.1 492 67.7
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-175 620.5 492 67.7
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.8e-175 619.8 491 65.8
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.3e-175 618.2 492 67.5
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 5.3e-175 618.2 492 66.9
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-174 617.1 492 67.3
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 4.5e-174 615.1 492 67.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 7.6e-174 614.4 493 65.9
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.2e-173 612.8 492 66.9
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.1e-172 610.5 487 65.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 2.5e-172 609.4 491 65.6
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.2e-172 609.0 492 65.7
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 7.2e-172 607.8 455 69.9
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 3.9e-170 602.1 494 65.0
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 5.7e-169 598.2 492 64.8
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.4e-167 593.6 491 63.1
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 7.7e-166 587.8 522 61.3
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.0e-165 587.4 492 64.6
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.4e-164 583.6 493 63.7
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 4.2e-164 582.0 493 63.7
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 7.2e-164 581.3 532 61.8
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.2e-163 580.5 492 63.2
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.1e-163 579.7 485 63.7
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.8e-162 576.6 493 62.5
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.1e-161 573.9 492 63.0
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.7e-160 570.1 492 63.8
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.1e-159 567.4 492 62.0
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.5e-158 563.5 494 61.7
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.0e-158 563.1 491 61.5
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 3.4e-158 562.4 494 61.5
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.3e-157 560.5 502 60.6
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.2e-157 559.7 494 61.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.4e-156 557.0 492 60.8
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 9.4e-156 554.3 494 60.5
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 6.1e-155 551.6 493 61.3
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.0e-154 550.8 492 61.6
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 5.7e-153 545.0 499 59.7
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 5.3e-151 538.5 535 57.4
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.7e-149 533.5 493 58.8
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.5e-148 530.4 458 63.3
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.2e-148 529.3 496 59.9
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.1e-145 520.8 502 58.4
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 4.8e-144 515.4 515 57.5
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.4e-143 513.8 535 54.2
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 2.4e-143 513.1 503 57.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.9e-141 506.1 497 57.9
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 3.0e-138 496.1 517 55.7
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 5.2e-138 495.4 503 55.7
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 7.7e-134 481.5 501 55.9
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 2.2e-133 479.9 490 55.1
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.0e-133 478.8 534 51.7
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 7.2e-132 474.9 507 52.9
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 4.7e-131 472.2 493 53.8
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 4.0e-130 469.2 376 66.0
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 5.2e-130 468.8 504 54.6
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 5.2e-130 468.8 569 50.6
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.6e-129 466.5 504 54.4
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 2.6e-129 466.5 490 54.9
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 4.4e-129 465.7 503 54.1
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 7.5e-129 464.9 503 53.7
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 9.8e-129 464.5 505 56.6
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 3.7e-128 462.6 569 50.3
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.8e-127 460.3 378 65.3
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 3.1e-127 459.5 505 54.3
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.1e-127 459.5 503 54.1
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.2e-126 457.6 377 65.8
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 4.5e-126 455.7 560 50.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.0e-125 454.5 512 52.9
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.3e-125 454.1 464 56.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 5.6e-124 448.7 514 52.5
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.7e-123 445.7 520 51.9
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 3.0e-122 443.0 506 52.6
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 3.0e-122 443.0 496 51.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.6e-121 439.9 509 51.5
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 4.4e-121 439.1 514 51.2
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 9.8e-121 438.0 513 52.2
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 2.2e-120 436.8 557 46.9
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.9e-120 436.4 448 54.0
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 4.1e-119 432.6 504 52.8
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 9.2e-119 431.4 516 51.2
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.3e-117 427.6 513 51.3
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.7e-107 392.5 281 73.3
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 2.3e-106 390.2 513 48.3
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 5.2e-106 389.0 350 60.6
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 5.2e-106 389.0 456 50.2
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 4.1e-103 379.4 343 59.8
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 7.6e-73 278.9 256 60.2
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.7e-72 277.7 219 65.8
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.4e-71 273.9 219 64.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.2e-71 273.1 385 43.9
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 2.5e-68 263.8 218 63.8
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 7.4e-68 262.3 268 55.2
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.8e-67 260.4 174 71.3
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.3e-61 240.7 224 58.0
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 3.4e-57 226.9 465 38.1
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.1e-54 217.6 367 41.1
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.8e-51 207.2 462 36.1
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.6e-46 191.4 433 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.7e-43 181.4 526 31.7
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.7e-38 164.1 490 28.2
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 4.7e-38 163.3 105 74.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 6.1e-38 162.9 434 31.8
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.6e-33 147.5 432 30.8
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.3e-32 145.2 445 31.0
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 3.8e-32 143.7 186 46.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.4e-26 125.2 487 27.9
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 5.0e-24 116.7 163 43.6
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 6.8e-21 106.3 136 47.1
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.6e-20 104.4 114 50.0
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 1.6e-17 95.1 81 61.7
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 1.1e-10 72.4 41 78.0
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 3.5e-09 67.4 91 49.5
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 8.0e-06 56.2 111 36.0


User provided reference genes

Program Settings