Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 0.0e+00 1611.3 894 100.0
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 0.0e+00 1608.2 894 99.8
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1263.4 900 79.1
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1262.3 902 76.2
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1245.3 902 76.2
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 0.0e+00 1242.6 899 76.9
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 0.0e+00 1230.7 900 77.2
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 0.0e+00 1220.3 900 77.1
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1196.4 888 75.3
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1188.7 901 74.4
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1174.8 901 74.4
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 0.0e+00 1165.2 864 75.5
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 0.0e+00 1162.9 869 75.3
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 0.0e+00 1161.7 900 73.6
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 0.0e+00 1157.9 899 72.1
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1149.8 899 72.3
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 0.0e+00 1147.1 902 72.8
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 0.0e+00 1146.0 907 71.3
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 0.0e+00 1124.8 906 74.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 0.0e+00 1114.0 866 72.4
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 1.9e-303 1045.8 914 65.9
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 6.7e-301 1037.3 909 68.1
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 1.1e-300 1036.6 916 65.2
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 2.5e-300 1035.4 913 64.5
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 4.8e-299 1031.2 917 65.8
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 5.5e-295 1017.7 917 65.6
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.2e-294 1016.5 902 65.2
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 6.1e-294 1014.2 917 67.2
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.7e-292 1007.7 912 64.1
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 6.3e-291 1004.2 914 65.0
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.7e-288 996.1 917 64.1
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 8.5e-288 993.8 914 64.1
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 1.9e-287 992.6 912 63.7
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.2e-287 990.7 916 62.1
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.0e-285 986.9 916 62.0
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.6e-284 982.2 912 66.2
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 2.4e-282 975.7 916 64.4
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.2e-281 973.4 916 64.4
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.0e-281 972.6 913 62.5
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.8e-277 959.5 912 63.8
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.1e-274 950.3 924 61.4
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.0e-272 943.7 924 61.0
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 1.3e-272 943.3 917 59.1
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 2.2e-272 942.6 876 63.9
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.6e-270 936.4 912 62.1
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 8.8e-269 930.6 874 63.8
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.7e-268 927.9 916 63.2
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.6e-265 919.8 911 63.4
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.6e-265 919.8 897 59.0
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 7.7e-265 917.5 916 60.3
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.0e-264 917.1 917 59.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.1e-263 913.7 928 58.2
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.7e-262 909.1 922 60.3
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-259 900.2 756 69.2
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.4e-258 896.7 918 59.4
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.8e-256 888.6 896 60.4
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 6.6e-256 887.9 919 56.9
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 6.6e-256 887.9 896 60.3
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 6.6e-256 887.9 927 60.4
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.1e-255 887.1 896 60.3
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.3e-255 885.6 919 56.8
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 5.6e-255 884.8 922 58.1
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 9.5e-255 884.0 926 58.7
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.2e-254 883.6 916 59.0
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 2.1e-254 882.9 926 58.6
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 8.0e-254 880.9 926 59.9
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 8.0e-254 880.9 905 58.1
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.8e-253 879.8 923 57.9
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.2e-253 878.2 906 59.6
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 8.9e-253 877.5 826 64.4
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.5e-252 876.7 923 57.7
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 7.5e-252 874.4 916 60.5
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 9.8e-252 874.0 910 58.8
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 9.8e-252 874.0 864 63.5
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.7e-251 873.2 809 65.1
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.9e-251 872.5 924 56.3
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 4.9e-251 871.7 762 69.6
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 6.4e-251 871.3 809 65.0
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 1.8e-250 869.8 794 63.6
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 3.2e-250 869.0 905 56.0
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 5.6e-247 858.2 912 56.8
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.4e-245 853.6 912 59.5
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 5.2e-245 851.7 908 56.7
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.4e-242 843.6 912 54.4
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.7e-240 836.6 898 56.5
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 3.1e-237 825.9 876 58.3
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 6.8e-237 824.7 917 55.2
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.1e-229 800.8 927 53.8
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.3e-227 793.9 914 53.8
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.1e-226 790.8 928 53.4
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 6.0e-225 785.0 924 52.6
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.6e-222 776.9 917 54.6
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 4.4e-220 768.8 868 54.7
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.7e-219 766.9 917 57.3
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.4e-213 747.3 907 51.9
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.2e-210 736.1 905 51.9
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 3.5e-209 732.6 901 55.5
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.8e-208 730.3 903 52.4
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 3.9e-208 729.2 922 53.1
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.6e-206 723.8 900 55.9
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 3.6e-206 722.6 906 55.4
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.1e-205 721.1 921 54.4
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.4e-205 720.7 921 49.5
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 4.0e-205 719.2 921 49.6
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 6.9e-205 718.4 878 54.9
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.5e-204 717.2 877 52.3
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.3e-203 714.1 883 56.6
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 4.9e-203 712.2 913 52.1
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 7.1e-202 708.4 907 52.5
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 2.1e-201 706.8 863 55.3
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 5.6e-199 698.7 910 51.3
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.1e-198 696.8 917 52.1
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.8e-198 696.4 779 53.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 8.2e-198 694.9 892 53.9
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 3.1e-197 693.0 858 49.0
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 9.0e-197 691.4 905 50.5
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 8.4e-195 684.9 912 48.9
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 8.4e-195 684.9 912 48.2
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 6.7e-192 675.2 891 51.5
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.0e-187 661.4 858 50.2
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 3.9e-184 649.4 890 50.8
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 2.5e-183 646.7 896 48.4
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 3.7e-182 642.9 893 50.2
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 3.7e-182 642.9 861 49.2
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 4.8e-182 642.5 904 49.6
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.1e-181 641.3 889 50.1
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.2e-180 637.9 893 49.6
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 3.4e-180 636.3 879 50.3
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 4.5e-180 636.0 892 49.4
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 7.2e-178 628.6 925 50.5
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 7.2e-178 628.6 744 55.9
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 2.0e-175 620.5 906 48.1
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 3.3e-175 619.8 929 48.1
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 2.2e-174 617.1 925 50.2
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 3.7e-174 616.3 863 50.2
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 2.6e-172 610.1 942 47.0
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 6.1e-169 599.0 924 45.0
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 5.3e-165 585.9 947 46.9
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 7.0e-165 585.5 950 46.8
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 5.0e-163 579.3 823 51.8
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.0e-160 571.6 784 47.6
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 6.7e-160 568.9 948 46.1
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 1.1e-157 561.6 878 46.2
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 4.1e-157 559.7 919 44.2
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 1.6e-148 531.2 855 47.7
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 8.0e-145 518.8 756 49.6
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 9.8e-143 511.9 852 45.2
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 4.9e-134 483.0 900 45.2
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 4.3e-130 469.9 912 40.7
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 7.0e-125 452.6 526 55.7
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 7.5e-119 432.6 631 51.0
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.6e-116 424.9 631 49.8
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 3.0e-115 420.6 921 38.8
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 8.4e-110 402.5 322 65.5
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.4e-109 401.0 353 66.3
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 6.9e-104 382.9 946 39.1
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.3e-102 378.6 910 37.7
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 6.4e-102 376.3 940 38.4
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.1e-100 371.3 787 39.5
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 2.3e-99 367.9 930 37.8
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 3.9e-99 367.1 651 48.4
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.9e-94 350.9 926 38.6
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.4e-93 347.8 926 38.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.1e-80 305.8 900 35.9
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.5e-77 294.7 937 33.4
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.8e-73 280.4 1026 32.4
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 1.0e-67 262.7 378 48.4
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.1e-61 242.7 359 45.1
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.5e-61 240.4 454 42.7
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.4e-56 224.9 301 44.9
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 3.1e-56 224.6 362 41.2
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 5.0e-54 217.2 258 50.4
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.5e-53 213.8 302 44.4
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 1.5e-50 205.7 379 40.1
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 2.4e-48 198.4 262 63.4
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 8.5e-46 189.9 520 36.0
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 2.7e-44 184.9 97 97.9
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.7e-44 184.1 146 61.6
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.7e-43 180.3 324 38.6
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 7.5e-42 176.8 356 35.1
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.5e-39 167.9 109 76.1
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 7.5e-34 150.2 312 35.9
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.7e-15 88.6 246 33.7


User provided reference genes

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