Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.3e-33 144.1 72 100.0
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-16 87.4 97 53.6
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.4e-15 85.9 97 52.6
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-15 85.5 97 52.6
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 3.1e-15 84.7 97 51.5
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 4.1e-15 84.3 97 51.5
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 6.9e-15 83.6 97 50.5
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 6.9e-15 83.6 97 50.5
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 9.0e-15 83.2 96 51.0
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.2e-14 82.8 96 50.0
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 2.6e-14 81.6 97 50.5
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 4.5e-14 80.9 96 49.0
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 4.5e-14 80.9 97 50.5
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 7.7e-14 80.1 97 47.4
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 3.8e-13 77.8 97 48.5
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.1e-12 76.3 97 46.4
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 2.5e-12 75.1 96 45.8
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-12 74.7 97 49.5
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-12 74.7 97 49.5
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 3.2e-12 74.7 97 45.4
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 4.2e-12 74.3 97 46.4
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 7.2e-12 73.6 72 51.4
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.2e-12 73.6 97 46.4
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.2e-11 72.8 97 44.3
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.2e-11 72.8 97 46.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.2e-11 72.8 96 45.8
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.6e-11 72.4 97 44.3
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-11 72.4 96 45.8
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-11 72.4 96 45.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-11 72.4 96 45.8
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-11 72.4 96 45.8
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-11 72.4 96 45.8
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 2.1e-11 72.0 96 45.8
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.1e-11 72.0 97 46.4
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.1e-11 72.0 97 44.3
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.7e-11 71.6 96 46.9
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 3.6e-11 71.2 97 45.4
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 3.6e-11 71.2 106 41.5
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 4.6e-11 70.9 96 44.8
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 7.9e-11 70.1 103 42.7
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 7.9e-11 70.1 97 43.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.0e-10 69.7 96 44.8
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.0e-10 69.7 99 43.4
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.0e-10 69.7 97 42.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.0e-10 69.7 97 42.3
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.4e-10 69.3 96 42.7
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.4e-10 69.3 96 42.7
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.8e-10 68.9 99 44.4
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.3e-10 68.6 98 41.8
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.3e-10 68.6 96 43.8
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 2.3e-10 68.6 97 41.2
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 2.3e-10 68.6 97 42.3
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 2.3e-10 68.6 97 42.3
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 3.0e-10 68.2 98 41.8
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-10 68.2 96 43.8
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 3.9e-10 67.8 102 40.2
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 3.9e-10 67.8 97 42.3
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.1e-10 67.4 96 41.7
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 5.1e-10 67.4 97 42.3
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 5.1e-10 67.4 99 39.4
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 5.1e-10 67.4 96 44.8
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 5.1e-10 67.4 103 42.7
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.1e-10 67.4 99 40.4
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.1e-10 67.4 99 40.4
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 5.1e-10 67.4 99 40.4
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 6.7e-10 67.0 102 38.2
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 8.8e-10 66.6 99 40.4
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.1e-09 66.2 55 61.8
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.1e-09 66.2 97 40.2
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.1e-09 66.2 100 42.0
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.1e-09 66.2 97 42.3
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.5e-09 65.9 91 46.2
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.5e-09 65.9 97 41.2
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.0e-09 65.5 100 40.0
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.0e-09 65.5 99 39.4
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 3.3e-09 64.7 97 39.2
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 4.3e-09 64.3 107 38.3
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 4.3e-09 64.3 98 42.9
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 4.3e-09 64.3 53 66.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.7e-09 63.9 97 43.3
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 5.7e-09 63.9 96 41.7
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 7.4e-09 63.5 96 40.6
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 7.4e-09 63.5 98 40.8
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 7.4e-09 63.5 97 39.2
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 7.4e-09 63.5 96 41.7
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 7.4e-09 63.5 97 40.2
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 7.4e-09 63.5 101 36.6
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 7.4e-09 63.5 97 40.2
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 9.7e-09 63.2 97 40.2
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.3e-08 62.8 93 40.9
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.3e-08 62.8 97 41.2
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-08 62.8 97 40.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.7e-08 62.4 97 41.2
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 2.8e-08 61.6 97 39.2
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 3.7e-08 61.2 97 39.2
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 3.7e-08 61.2 97 38.1
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 4.8e-08 60.8 96 39.6
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 6.3e-08 60.5 97 37.1
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 6.3e-08 60.5 97 37.1
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 6.3e-08 60.5 97 37.1
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 6.3e-08 60.5 97 37.1
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 6.3e-08 60.5 97 37.1
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.1e-07 59.7 46 60.9
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.4e-07 59.3 101 35.6
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.8e-07 58.9 100 40.0
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.4e-07 58.5 97 38.1
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 2.4e-07 58.5 33 81.8
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 3.1e-07 58.2 97 37.1
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-07 57.8 31 87.1
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-07 57.8 31 87.1
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 4.1e-07 57.8 32 81.2
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 5.3e-07 57.4 97 36.1
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.3e-07 57.4 54 51.9
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 6.9e-07 57.0 72 40.3
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 2.0e-06 55.5 97 36.1
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 2.6e-06 55.1 97 36.1
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 3.4e-06 54.7 109 32.1
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 5.9e-06 53.9 97 35.1


User provided reference genes

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