Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 2.0e-71 272.3 138 100.0
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 4.7e-28 128.3 119 68.9
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 8.0e-28 127.5 115 70.4
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 5.7e-26 121.3 119 63.0
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 9.8e-26 120.6 119 66.4
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 4.9e-25 118.2 100 75.0
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 4.1e-24 115.2 120 60.8
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 9.2e-24 114.0 121 62.0
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.6e-23 113.2 109 58.7
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 1.0e-22 110.5 88 69.3
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 2.3e-22 109.4 118 58.5
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 3.9e-22 108.6 118 60.2
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 5.0e-22 108.2 120 60.0
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 6.6e-22 107.8 91 68.1
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 8.6e-22 107.5 104 58.7
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 4.3e-21 105.1 95 65.3
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 7.3e-21 104.4 115 55.7
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 1.6e-20 103.2 118 58.5
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 2.1e-20 102.8 88 69.3
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.6e-20 102.1 127 53.5
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 8.0e-20 100.9 112 58.0
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 1.4e-19 100.1 115 57.4
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 1.8e-19 99.8 110 57.3
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 2.3e-19 99.4 88 64.8
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 2.3e-19 99.4 115 55.7
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.1e-19 99.0 98 61.2
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 5.2e-19 98.2 121 53.7
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 6.8e-19 97.8 111 57.7
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.2e-18 97.1 88 61.4
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.5e-18 96.7 120 55.0
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 2.6e-18 95.9 91 59.3
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.6e-18 95.9 121 50.4
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 4.4e-18 95.1 125 48.8
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 4.4e-18 95.1 117 53.0
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 5.8e-18 94.7 117 51.3
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 7.5e-18 94.4 108 57.4
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.5e-18 94.4 104 53.8
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 7.5e-18 94.4 104 53.8
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 9.8e-18 94.0 115 50.4
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 9.8e-18 94.0 99 54.5
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 9.8e-18 94.0 100 58.0
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 3.7e-17 92.0 89 62.9
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 3.7e-17 92.0 88 59.1
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 4.9e-17 91.7 125 48.0
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 6.4e-17 91.3 103 52.4
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.1e-16 90.5 89 66.3
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 1.1e-16 90.5 87 62.1
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.4e-16 90.1 94 57.4
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.4e-16 90.1 89 59.6
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.4e-16 90.1 101 56.4
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 1.4e-16 90.1 89 55.1
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.9e-16 89.7 107 51.4
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.4e-16 89.4 104 51.0
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.4e-16 89.4 96 62.5
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-16 88.6 94 55.3
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-16 88.6 94 55.3
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-16 88.6 94 55.3
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.1e-16 88.6 88 61.4
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.1e-16 88.6 88 61.4
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 4.1e-16 88.6 88 61.4
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 5.4e-16 88.2 96 54.2
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 5.4e-16 88.2 106 50.9
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 5.4e-16 88.2 102 57.8
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 7.0e-16 87.8 105 51.4
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 7.0e-16 87.8 106 49.1
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 9.2e-16 87.4 106 49.1
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 9.2e-16 87.4 101 55.4
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.2e-15 87.0 98 57.1
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.6e-15 86.7 94 54.3
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.6e-15 86.7 94 54.3
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 2.0e-15 86.3 98 55.1
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 2.7e-15 85.9 104 50.0
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 3.5e-15 85.5 102 49.0
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 3.5e-15 85.5 106 49.1
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 4.6e-15 85.1 94 51.1
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 4.6e-15 85.1 89 57.3
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 4.6e-15 85.1 88 56.8
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 4.6e-15 85.1 104 50.0
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 4.6e-15 85.1 104 50.0
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 6.0e-15 84.7 106 50.0
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.0e-15 84.7 116 50.0
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 6.0e-15 84.7 102 51.0
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 7.8e-15 84.3 113 48.7
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 7.8e-15 84.3 115 47.8
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 7.8e-15 84.3 97 55.7
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.0e-14 84.0 97 55.7
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 1.0e-14 84.0 104 50.0
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 1.0e-14 84.0 94 52.1
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.0e-14 84.0 101 50.5
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 1.7e-14 83.2 89 59.6
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.3e-14 82.8 94 54.3
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.3e-14 82.8 97 55.7
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 3.0e-14 82.4 99 51.5
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 3.0e-14 82.4 97 55.7
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.0e-14 82.4 92 52.2
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 3.0e-14 82.4 87 57.5
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 3.0e-14 82.4 88 54.5
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 3.0e-14 82.4 102 49.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.9e-14 82.0 97 55.7
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 5.0e-14 81.6 107 53.3
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 5.0e-14 81.6 106 49.1
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 5.0e-14 81.6 96 56.2
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.6e-14 81.3 90 53.3
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 8.6e-14 80.9 105 51.4
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 8.6e-14 80.9 106 50.0
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 1.1e-13 80.5 121 43.8
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 1.1e-13 80.5 91 51.6
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.1e-13 80.5 102 50.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.1e-13 80.5 87 56.3
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 1.5e-13 80.1 97 48.5
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.5e-13 80.1 92 51.1
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 1.9e-13 79.7 99 51.5
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.9e-13 79.7 92 54.3
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.9e-13 79.7 92 53.3
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.9e-13 79.7 90 52.2
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 1.9e-13 79.7 92 53.3
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.9e-13 79.7 88 56.8
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 2.5e-13 79.3 106 42.5
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.5e-13 79.3 96 54.2
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 3.3e-13 79.0 99 50.5
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 3.3e-13 79.0 115 49.6
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.3e-13 79.0 101 46.5
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 4.3e-13 78.6 95 46.3
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.6e-13 78.2 123 48.8
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 5.6e-13 78.2 83 57.8
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 5.6e-13 78.2 93 52.7
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 7.3e-13 77.8 97 49.5
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.3e-13 77.8 92 52.2
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.2e-12 77.0 92 54.3
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.6e-12 76.6 94 53.2
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.6e-12 76.6 71 57.7
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 1.6e-12 76.6 91 50.5
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.6e-12 76.6 89 52.8
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 2.1e-12 76.3 105 49.5
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 4.7e-12 75.1 93 50.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 4.7e-12 75.1 97 46.4
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.7e-12 75.1 71 59.2
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 1.1e-11 73.9 103 47.6
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 1.1e-11 73.9 103 47.6
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 1.1e-11 73.9 103 47.6
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.4e-11 73.6 97 48.5
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.8e-11 73.2 115 44.3
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.3e-11 72.8 102 50.0
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.2e-11 71.6 88 52.3
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 5.2e-11 71.6 95 49.5
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 6.8e-11 71.2 94 45.7
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 6.8e-11 71.2 98 51.0
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.5e-10 70.1 99 43.4
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 1.5e-10 70.1 115 45.2
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.6e-10 69.3 94 48.9
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 2.6e-10 69.3 94 50.0
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.4e-10 68.9 95 46.3
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.9e-09 65.9 89 48.3
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 6.4e-09 64.7 99 48.5
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.4e-09 64.7 95 44.2
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 6.4e-09 64.7 92 45.7
Lalb_Chr13g0291181 Lupinus albus HOM05D003527 ORTHO05D004099 6.4e-09 64.7 81 53.1
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 1.6e-07 60.1 88 43.2
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 3.5e-07 58.9 89 43.8
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 4.6e-07 58.5 96 41.7
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.0e-06 57.4 107 38.3
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.3e-06 57.0 107 40.2
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 1.7e-06 56.6 95 42.1
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 6.6e-06 54.7 88 44.3


User provided reference genes

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