Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 4.6e-208 727.6 366 100.0
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 3.4e-203 711.4 366 98.4
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 8.7e-122 441.0 232 99.1
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.3e-96 357.5 232 80.2
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 6.3e-96 355.1 232 78.0
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 9.0e-95 351.3 232 78.0
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 9.0e-95 351.3 232 77.2
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 1.0e-93 347.8 232 77.2
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 7.9e-91 338.2 232 75.4
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.3e-90 336.7 232 75.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 8.8e-90 334.7 232 74.1
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 8.8e-90 334.7 232 74.6
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.1e-89 334.3 232 74.6
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.1e-89 334.3 232 74.1
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 7.4e-89 331.6 232 72.0
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.3e-88 330.9 232 75.0
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.7e-88 330.5 232 75.4
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.7e-88 330.5 232 75.4
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.2e-88 330.1 232 75.0
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.8e-88 329.7 232 74.1
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 8.2e-88 328.2 232 75.0
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 8.2e-88 328.2 232 72.0
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.8e-87 327.0 232 72.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 4.1e-87 325.9 232 72.8
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 5.3e-87 325.5 232 72.4
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 9.1e-87 324.7 232 73.3
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 4.5e-86 322.4 233 72.5
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 5.9e-86 322.0 232 70.3
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 5.9e-86 322.0 232 71.6
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.7e-85 320.5 232 72.4
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 5.0e-85 318.9 232 70.7
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 5.0e-85 318.9 232 71.6
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.1e-84 317.8 232 70.3
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.4e-84 317.4 232 71.1
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.4e-84 317.4 309 57.3
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 3.2e-84 316.2 232 70.3
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 4.2e-84 315.8 241 68.5
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 5.5e-84 315.5 232 71.1
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 7.2e-84 315.1 232 69.8
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.2e-83 314.3 232 71.1
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 1.6e-83 313.9 233 69.5
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 2.1e-83 313.5 232 71.6
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.6e-83 312.8 232 71.6
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 4.7e-83 312.4 234 70.9
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 4.7e-83 312.4 232 68.5
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 6.1e-83 312.0 232 70.7
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 6.1e-83 312.0 232 71.1
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.0e-82 311.2 232 70.7
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.0e-82 311.2 232 69.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.8e-82 310.5 232 69.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 2.3e-82 310.1 231 71.0
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 5.2e-82 308.9 232 70.7
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 6.7e-82 308.5 233 70.0
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.1e-81 307.8 232 69.8
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.5e-81 307.4 233 70.0
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.0e-81 307.0 232 69.8
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.6e-81 306.6 232 69.8
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 4.4e-81 305.8 232 66.8
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 4.4e-81 305.8 220 72.3
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 5.7e-81 305.4 232 69.8
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 5.7e-81 305.4 232 67.2
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 5.7e-81 305.4 232 69.4
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-79 301.2 252 65.5
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.1e-79 301.2 233 68.2
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.1e-79 301.2 232 68.1
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.4e-79 300.8 232 67.7
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.4e-79 300.8 232 66.4
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.8e-79 300.4 232 67.2
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 3.1e-79 299.7 232 67.2
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.1e-79 299.7 237 67.9
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 5.3e-79 298.9 232 66.8
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.0e-78 297.0 232 65.9
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 2.6e-78 296.6 234 67.5
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 3.5e-78 296.2 233 66.5
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 7.7e-78 295.0 232 67.2
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.0e-77 294.7 233 66.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.0e-77 294.7 256 62.5
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.7e-77 293.9 254 63.8
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 2.5e-76 290.0 232 62.5
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 3.2e-76 289.7 232 62.9
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 4.2e-76 289.3 232 62.5
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 5.5e-76 288.9 232 64.2
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 7.2e-76 288.5 232 62.5
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 9.4e-76 288.1 232 62.5
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.6e-75 287.3 232 62.5
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.6e-75 287.3 232 62.1
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.6e-75 287.3 232 62.1
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 2.7e-75 286.6 232 62.1
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.7e-75 286.6 232 62.1
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.7e-75 286.6 232 62.1
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 6.1e-75 285.4 232 62.1
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 6.1e-75 285.4 233 63.5
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.0e-74 284.6 233 62.7
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.8e-74 283.9 232 67.2
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.3e-74 283.5 232 61.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.0e-74 283.1 309 54.0
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 4.0e-74 282.7 232 61.6
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.2e-73 281.2 265 58.5
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 2.0e-73 280.4 232 60.3
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.3e-72 277.7 220 66.4
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.7e-72 276.2 232 60.3
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.2e-69 266.9 238 60.1
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.1e-68 264.6 219 63.0
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.5e-68 263.5 201 66.7
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 4.2e-68 262.7 360 46.1
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 9.8e-65 251.5 320 49.1
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.8e-63 247.3 215 60.9
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 7.0e-63 245.4 232 56.5
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.2e-62 244.6 232 58.2
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.9e-60 237.3 185 67.0
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.2e-59 234.6 168 73.2
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.0e-58 229.6 185 66.5
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 3.5e-54 216.5 232 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 5.0e-53 212.6 232 51.7
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.5e-52 211.1 140 76.4
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.9e-52 210.7 141 73.0
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 2.1e-51 207.2 231 52.8
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 2.8e-51 206.8 166 66.3
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 6.1e-51 205.7 166 65.1
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.7e-49 199.1 166 63.3
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.4e-47 194.5 285 43.5
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 5.4e-47 192.6 236 45.8
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 2.7e-46 190.3 138 67.4
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.7e-45 187.6 150 66.0
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 4.3e-44 183.0 117 79.5
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 4.0e-42 176.4 111 78.4
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.5e-41 174.5 245 46.9
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 2.0e-41 174.1 178 51.1
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 5.8e-41 172.6 244 45.1
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 7.0e-39 165.6 220 45.9
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 9.2e-39 165.2 266 41.4
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 6.0e-38 162.5 141 58.9
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.6e-35 154.5 151 53.0
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.1e-34 151.8 145 55.2
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.8e-34 151.0 291 36.1
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.4e-31 140.6 119 62.2
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.9e-28 131.0 93 66.7
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.5e-25 121.3 124 55.6
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.5e-25 121.3 111 56.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 5.6e-20 102.8 72 68.1
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 3.1e-18 97.1 71 62.0
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 6.9e-18 95.9 65 67.7
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 8.9e-18 95.5 104 51.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.9e-16 89.7 80 61.2
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.2e-14 85.1 54 79.6
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.6e-14 84.7 125 42.4
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.0e-13 82.0 108 47.2
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 3.0e-13 80.5 137 38.7
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 3.0e-13 80.5 71 53.5
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.9e-12 77.8 69 56.5
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.9e-12 77.8 88 50.0
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.3e-12 77.0 58 65.5
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 5.8e-09 66.2 95 41.1
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.9e-07 61.2 69 44.9
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 3.5e-06 57.0 41 63.4
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.6e-06 56.6 38 65.8


User provided reference genes

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