Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.0e-192 675.6 343 100.0
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.1e-190 668.3 343 98.8
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 6.0e-157 557.8 343 83.1
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 8.3e-151 537.3 343 81.0
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.1e-150 537.0 346 80.1
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 4.1e-150 535.0 346 78.3
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 4.6e-149 531.6 346 80.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.6e-144 515.8 348 76.4
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 2.5e-139 499.2 348 75.3
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.2e-138 496.9 331 75.2
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 3.1e-137 492.3 346 75.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 3.2e-134 482.3 335 76.7
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.1e-131 473.8 344 71.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.5e-131 473.4 344 72.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 9.6e-131 470.7 344 73.8
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.6e-130 469.9 350 70.6
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.8e-130 469.2 344 71.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 4.9e-127 458.4 320 75.9
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 4.9e-127 458.4 343 72.3
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.1e-126 457.2 344 70.1
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.4e-126 456.1 347 69.7
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.2e-125 453.8 346 70.5
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.6e-125 451.8 344 70.9
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.0e-124 450.7 346 70.2
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-124 449.9 346 69.9
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.7e-124 447.6 344 70.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.9e-123 446.4 344 70.9
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.9e-123 446.4 347 70.3
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 3.3e-123 445.7 345 69.6
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.3e-123 445.7 344 68.9
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 5.6e-123 444.9 277 81.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.6e-122 443.4 350 69.4
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.6e-122 443.4 346 70.2
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.8e-122 442.6 348 68.1
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.1e-121 440.7 344 69.2
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.0e-121 438.7 344 70.1
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.0e-121 438.7 344 70.1
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.0e-121 438.7 344 70.6
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 5.3e-121 438.3 347 69.7
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 6.9e-121 438.0 344 69.2
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.5e-120 436.8 356 67.4
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.4e-120 435.6 344 69.2
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 9.9e-120 434.1 348 68.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-119 433.7 339 69.3
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 9.3e-118 427.6 345 67.0
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.1e-117 426.4 344 67.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 5.1e-116 421.8 336 67.3
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.1e-115 420.6 346 66.5
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.5e-115 420.2 348 66.1
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 4.3e-115 418.7 344 67.2
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.3e-115 418.7 344 66.3
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 9.6e-115 417.5 345 65.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.6e-115 417.5 344 68.3
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 9.6e-115 417.5 344 65.7
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.8e-114 416.0 409 59.4
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 4.8e-114 415.2 345 65.5
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.8e-114 415.2 344 68.0
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.1e-113 414.1 345 65.5
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 2.4e-113 412.9 346 66.2
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.1e-113 412.5 344 67.7
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 6.9e-113 411.4 336 65.8
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.0e-113 411.0 345 67.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.0e-112 409.8 343 67.1
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.4e-112 409.1 345 67.0
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 4.5e-112 408.7 345 64.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 5.8e-112 408.3 414 58.2
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.9e-111 406.0 346 65.3
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 6.5e-111 404.8 344 64.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.4e-111 404.4 389 60.2
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.9e-110 403.3 343 65.9
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.2e-109 400.6 346 64.5
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 5.1e-108 395.2 346 64.2
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 9.7e-107 391.0 344 62.2
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.4e-105 387.1 350 62.3
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 1.4e-105 387.1 345 62.3
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.8e-105 386.7 345 62.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 3.4e-104 382.5 345 62.3
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.3e-103 380.6 295 69.8
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.9e-103 379.4 358 63.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 6.5e-103 378.3 345 62.6
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.1e-102 377.5 344 63.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.9e-102 376.7 398 57.0
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 1.9e-102 376.7 344 60.8
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 9.4e-102 374.4 346 61.6
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.6e-101 373.6 347 64.8
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.1e-101 373.2 348 61.8
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.0e-100 369.4 345 62.0
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 5.1e-100 368.6 343 60.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.1e-99 367.5 350 62.9
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.0e-99 366.7 346 60.7
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.5e-99 366.3 347 59.4
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 9.7e-99 364.4 326 63.5
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 8.2e-98 361.3 348 60.3
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 8.2e-98 361.3 347 59.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 6.9e-97 358.2 345 60.6
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 9.1e-97 357.8 347 60.5
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.5e-96 357.1 343 60.3
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.4e-96 355.9 349 58.7
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.7e-95 353.6 345 60.3
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.2e-95 353.2 344 60.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.9e-95 352.8 345 58.6
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 6.5e-95 351.7 345 59.4
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 8.5e-95 351.3 344 58.4
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.1e-94 350.9 345 60.6
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.1e-94 350.9 326 64.1
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.2e-94 349.4 347 61.1
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.2e-94 348.2 344 58.4
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 7.9e-93 344.7 283 66.1
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.9e-93 344.7 344 59.3
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.0e-92 344.4 353 56.9
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.4e-92 344.0 344 57.0
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-92 343.2 348 58.0
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.0e-92 342.8 345 58.3
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 5.1e-92 342.0 345 58.3
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 6.7e-92 341.7 345 60.6
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 8.8e-92 341.3 346 58.1
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-91 340.9 343 59.5
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.1e-91 340.9 343 59.5
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-91 340.1 343 59.2
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 2.6e-91 339.7 343 59.2
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 7.4e-91 338.2 343 58.6
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 9.7e-91 337.8 345 58.3
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 2.4e-89 333.2 344 58.7
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 7.0e-89 331.6 343 58.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-88 330.9 343 57.4
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.2e-88 330.9 343 57.4
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.0e-88 330.1 344 58.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-88 330.1 343 57.4
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 5.0e-87 325.5 347 57.1
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.1e-86 324.3 344 54.7
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.5e-86 323.2 358 55.0
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 4.2e-86 322.4 343 54.8
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.5e-86 322.0 332 55.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.5e-86 322.0 348 52.9
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 6.1e-85 318.5 248 69.4
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 6.7e-84 315.1 339 55.8
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 8.8e-84 314.7 338 53.6
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.6e-83 313.2 263 66.9
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.6e-83 313.2 282 64.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.3e-82 310.8 342 54.1
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.7e-79 300.4 343 52.8
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.4e-67 259.6 343 50.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.8e-66 256.5 207 69.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.3e-60 236.9 339 45.7
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 3.4e-59 233.0 247 53.8
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.4e-49 201.1 349 39.8
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 2.8e-45 186.8 340 41.5
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.6e-38 162.5 243 42.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.3e-34 151.4 399 30.8
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 5.8e-27 125.9 154 50.6
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.4e-25 119.4 156 49.4
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 2.2e-18 97.4 90 58.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.5e-16 90.1 261 33.0
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.3e-14 83.6 142 38.0
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.9e-10 70.5 181 33.1
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 4.2e-09 66.6 243 25.9
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 9.3e-09 65.5 189 29.6
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.1e-08 64.3 145 34.5
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.8e-07 61.2 337 24.9
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.9e-06 57.8 265 23.0
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 7.4e-06 55.8 184 25.0


User provided reference genes

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